Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1489 ATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCACCTTCTGATAGTGGAATGAGAAGATGTGGGTTTAATATAGATGGATTTAACCGTGCAGTCCATGGGAATGATAAGCCGTCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCTGAAGGACTTAAATCGATTGGCCGATCACTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAAATCTTCGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCAGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAGCTTGAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATCATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGAACAGCTTATATTGCACCATCATCTCGGGTGTTTGGAAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAGCGATACTTGCGGCGGTACTTCATCATTGACTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTGTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTTCCATTGGCTTCAGAGTTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGCAATGATACATGTTGGCAGAAGTATTGTATTGCCCCTATTTGCAGGAAAGATTTCTTGTATTGTGGTAACCAAGACATGGAAGGTTATGCAACTTGGAACCAGACAGGTGTTGATGGCCTTAAGTCAAGTTGCGCACCTACTGATGGAAATGAACAGTTCGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGTATTGCCGCTTCCAAGAATTTTATCGCTAAATACTGTTACTGTCTGTGGTGGGGACTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATAGCATTAGCTGTACTTGGTCTCATTCTCTTTGCTCTTCTTATTGGCAATATGCAGACTTACCTTCAATCTCTAACTATAAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAGCAGTGGATGCATCACCGATTGCTGCCGCAGGATCTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAAACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTCTACCTAAGGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCTTGTTTGTTTACGGAGTACACTTACATAGTGCGTGAGGGTGATCCAGTTGATGAGATGCTTTTCATTATCCGTGGTCGGCTTGAGAGTGTGACTACAGATGGCGGGCGGAGTGGATTTTTCAACCGTTCCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTTTGGATCCGAAATCTGGTTCAAATCTTCCATCTTCTACAAGGACGGTGAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAATTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCGCAGCAATGGAGGACCTGGGCTGCCTGCTTCATCCAAGCGGCATGGCGCCGATATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAGGGATCTCATACTGCCACAAGTGGAGGCTCTTATAGTATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGGGGGGTTCAGCGATACCGGAATGCAAAGAGCGCTCAGGAATTAATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGCGCTGATGATGCAGATTGA 2175 43.86 MGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFFYVPVINQSLNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLVIVFLQYIPRFLRAFPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCIAPICRKDFLYCGNQDMEGYATWNQTGVDGLKSSCAPTDGNEQFDFGIFQQALSSGIAASKNFIAKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSHTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28358284 28371162 + ClG42_02g0148900.10 Clacu02g1489 243557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1489 724 SMART cnmp_10 495 626 IPR000595 -
Clacu02g1489 724 Gene3D - 100 420 - -
Clacu02g1489 724 Pfam Cyclic nucleotide-binding domain 520 605 IPR000595 -
Clacu02g1489 724 CDD CAP_ED 495 626 IPR000595 -
Clacu02g1489 724 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 73 712 - -
Clacu02g1489 724 Pfam Ion transport protein 102 421 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1489 724 SUPERFAMILY Voltage-gated potassium channels 91 417 - -
Clacu02g1489 724 ProSiteProfiles IQ motif profile. 631 660 - -
Clacu02g1489 724 ProSiteProfiles cAMP/cGMP binding motif profile. 495 579 IPR000595 -
Clacu02g1489 724 Gene3D Helix hairpin bin 423 486 - -
Clacu02g1489 724 FunFam Cyclic nucleotide-gated ion channel 1 422 486 - -
Clacu02g1489 724 FunFam Cyclic nucleotide-gated ion channel 1 493 611 - -
Clacu02g1489 724 Gene3D Jelly Rolls 493 613 IPR014710 -
Clacu02g1489 724 PRINTS EAG/ELK/ERG potassium channel family signature 144 154 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g1489 724 PRINTS EAG/ELK/ERG potassium channel family signature 390 401 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g1489 724 PRINTS EAG/ELK/ERG potassium channel family signature 155 164 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g1489 724 PRINTS EAG/ELK/ERG potassium channel family signature 458 465 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g1489 724 PRINTS EAG/ELK/ERG potassium channel family signature 408 417 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g1489 724 PRINTS EAG/ELK/ERG potassium channel family signature 272 282 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g1489 724 SUPERFAMILY cAMP-binding domain-like 424 615 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1489 Clacu-Chr2:28358284 Clacu10g1459 Clacu-Chr10:27746792 1.10E-299 dispersed
Clacu02g1489 Clacu-Chr2:28358284 Clacu01g0052 Clacu-Chr1:477478 1.00E-207 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1489 K05391 - csv:101219180 1355.89