Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1512 ATGGCTACCAATAATCTAAACAAAGAGCTGTCAAAGAAAACAAACATATTTGGACTAAAAGTATGGGAAGTGATTGGAATTGGAGTAGGCCTATTCATAATCTCAATCCTCTGTATACTCTCACTATGTTTAACCTCATTCAACAAGAAGTCAAAAAAATCATCATCATCATCACCCAACTCCAACACCTTATTCCCTCTCACTCAAATCCCATCTCATTCAAAAGACATAAAGGCAGTTCACATAACAACTACTCACAAAAAGCCAACAACTCAAATGGGAAAATTTGAAACCAATAATAATTACAGCAGTGAATCGGGATCATTGTTTCAACCATTGGGTTATGGCTATGGATCACAATCAGGGGATGAAGGCAGCTCGGGCACCATCACGACGACAACAATGTACCGACGTTCGACGTCGCCTACTACGACGATGGCTCCTTCGCCGTTGTCGTGTATGCCGGAGATGTCGCAATTGGGGTGGGGGTATTGGTTTACTTTGAGAGAGCTGGATTTGGCTACTAATTTGTTCTCAGAAGAGAATTTGATTGGAGAAGGAGGGTATGGAGTTGTGTTTAGAGGGAAGTTGTTGAATGGGACACCAGTGGCAGTTAAGAAGATTTTTAATGGACAGGGCCAAGCTGAGAAGGAATTCAGAGCGGAAGTTGAGGCAATTGGGCATGTAAGACATAAGAATCTTGTTCGTCTTTTGGGATATTGCATTGAAGGGACTCACAGGATGCTGGTGTATGAGTATATAAACAATGGAAGCTTAGAGCTATGGCTACATGAAGGAATGGGAGAGAATAGATATCTTACATGGGAGGCTCGAATGAAGATCATGTTGGGGACAGCCAAAGGGATTGCATACTTACACGAAGCCATTGAGCCAAAGGTGGTACATCGAGACATAAAGGCTAGCAACATACTTATAGATGAAAATTTCAATGCTAAAGTATCAGATTTTGGGCTAGCAAAGTTGATGGATGCTGGCAAAACTCATGTCACAACAAGAGTTATGGGTACATTTGGTTATGTGGCTCCTGAATATGCTAACACTGGACTTCTAAATGAGAAGAGCGACGTGTATAGCTTTGGAGTTGTGCTGGTGGAAACAATCACGGGAAGAGATCCAGTGGACTATGGACGTCCGCACAAACAGGTGAATGTAGTAGATTGGCTGAAAATGATGATTGGAAGTAGAAGATGTGAAGAAGTGGTAGACACAAAATTAGGGGTTGGAGGAAGGCCATCCACAAAAGGGTTGAAAAGAGTTCTATTGGTTGCATTAAGATGTGTGGATCCTGATTATGACAAGAGACCAAAAATGGGCCACGTTGTTAGAATGCTTGAATCTCAAGATCATCATTATAATTCTTCTCGTACACCTTCTACTACTACTACTTAA 1410 41.56 MATNNLNKELSKKTNIFGLKVWEVIGIGVGLFIISILCILSLCLTSFNKKSKKSSSSSPNSNTLFPLTQIPSHSKDIKAVHITTTHKKPTTQMGKFETNNNYSSESGSLFQPLGYGYGSQSGDEGSSGTITTTTMYRRSTSPTTTMAPSPLSCMPEMSQLGWGYWFTLRELDLATNLFSEENLIGEGGYGVVFRGKLLNGTPVAVKKIFNGQGQAEKEFRAEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYINNGSLELWLHEGMGENRYLTWEARMKIMLGTAKGIAYLHEAIEPKVVHRDIKASNILIDENFNAKVSDFGLAKLMDAGKTHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLVETITGRDPVDYGRPHKQVNVVDWLKMMIGSRRCEEVVDTKLGVGGRPSTKGLKRVLLVALRCVDPDYDKRPKMGHVVRMLESQDHHYNSSRTPSTTTT 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28586415 28591506 + ClG42_02g0151200.10 Clacu02g1512 243580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1512 469 ProSiteProfiles Protein kinase domain profile. 178 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1512 469 Gene3D Transferase(Phosphotransferase) domain 1 254 465 - -
Clacu02g1512 469 PANTHER OS01G0323000 PROTEIN 5 461 IPR052232 -
Clacu02g1512 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1512 469 CDD STKc_IRAK 184 452 - -
Clacu02g1512 469 SUPERFAMILY Protein kinase-like (PK-like) 151 456 IPR011009 -
Clacu02g1512 469 Pfam Protein kinase domain 179 390 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1512 469 FunFam serine/threonine-protein kinase PBS1-like 152 253 - -
Clacu02g1512 469 Gene3D Phosphorylase Kinase; domain 1 154 253 - -
Clacu02g1512 469 ProSitePatterns Protein kinases ATP-binding region signature. 184 207 IPR017441 GO:0005524(InterPro)
Clacu02g1512 469 FunFam Putative receptor-like serine/threonine-protein kinase 254 466 - -
Clacu02g1512 469 SMART serkin_6 178 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1512 Clacu-Chr2:28586415 Clacu09g2270 Clacu-Chr9:37442004 1.20E-148 dispersed
Clacu02g1512 Clacu-Chr2:28586415 Clacu06g0403 Clacu-Chr6:4823775 2.20E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73342 PF00069 Pkinase 8.80E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1512 - - - 0.0