Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1517 ATGGAAAAAGGAGATAATATTACAGCATTAATAGGGATGATTGTATTGCAAATATGCTATGCTGGTATAAATATTATCTCAAAGCTTGCCATGCAATCTGGAATGAACCCTCTTGTTCTTCTCACTTATAGACAGATTTTTGGCACTTTGGCCATTGCTCCTTTTGCCTTCTTTACTGAAAGGAAAACCAGGCCAAAGATTACTTTTACAGTTCTGATTCAAATCTTTGCGTGTTCCTTATCAGGAGCAACAGGAAACCAGATATTCTTCTTTGTTGGGTTGAAGTACACAAACCCAACAATTTCGAGTGCTATGGCCAATGTTCTTCCAGCTGCTACTTTTATTCTTGCTGTTCTTTTCAGACAAGAGAGTGTGAGAATCAAGACCAAGTCTGGTTTTGCAAAGGTAATAGGGACAATTGTGTGTGTATGTGGGGCAATGCTGCTGTCTTTCTACCATGGACACACCATTGACTTAGGTGAATCAAAAATTCACTGGCCATATGTTGAGAAAATGATCAAGGAAACAAACCCGGCCAACCATCAAGGAAACCGTGTCCTCGGCTCCATTTTGTTGCTCTTCAGCTCTTTTGCTTGGGCATTATGGTTTGTCATCCAAGCAAGATTGAGTGTGAAGTTCAAAGCTCCCTATACAAGTACTGCATTGTTGTGCTTCATGGCCTTTTTCCAATGTGGACTCATAGCTGTGATTTCAGAGCACAATATTGCTGCTTGGTCTTTGAAAAGTACGATCCGACTCGTTGCAGCTCTTTACGCGGGAGTTGTGTGCTCTGGATTGACATTTAGCATAACTTCATGGATTATACAAAGGAAAGGCCCTCTCTATGTCTCCATTTTCACCCCTTTATTGCTTATCATTGTGGCCATCGTTAGCTGGACTCTCCTCCATGAACAACTCTACGTGGGAACTGTTATTGGGTCTATTTTGATAATCATTGGGCTTTATGCTGTGCTATGGGGAAAATCCAAAGAGATGAAAGTAGAAGATGATCATGACAACATGGAAAAACCAAGAATAGAGAAGCCAAATGGAAATGGGAGTCATATTATTGAGGAGAAGGATGACATGGAATTGCAAATCACATACATCAAATAA 1116 40.41 MEKGDNITALIGMIVLQICYAGINIISKLAMQSGMNPLVLLTYRQIFGTLAIAPFAFFTERKTRPKITFTVLIQIFACSLSGATGNQIFFFVGLKYTNPTISSAMANVLPAATFILAVLFRQESVRIKTKSGFAKVIGTIVCVCGAMLLSFYHGHTIDLGESKIHWPYVEKMIKETNPANHQGNRVLGSILLLFSSFAWALWFVIQARLSVKFKAPYTSTALLCFMAFFQCGLIAVISEHNIAAWSLKSTIRLVAALYAGVVCSGLTFSITSWIIQRKGPLYVSIFTPLLLIIVAIVSWTLLHEQLYVGTVIGSILIIIGLYAVLWGKSKEMKVEDDHDNMEKPRIEKPNGNGSHIIEEKDDMELQITYIK 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28630346 28633467 + ClG42_02g0151700.10 Clacu02g1517 243585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1517 371 PANTHER WAT1-RELATED PROTEIN 12 338 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu02g1517 371 Pfam EamA-like transporter family 9 150 IPR000620 GO:0016020(InterPro)
Clacu02g1517 371 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020(InterPro)
Clacu02g1517 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 330 - -
Clacu02g1517 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0420 Clacu-Chr1:4255165 Clacu02g1517 Clacu-Chr2:28630346 1.40E-34 dispersed
Clacu01g1095 Clacu-Chr1:16150223 Clacu02g1517 Clacu-Chr2:28630346 6.60E-118 dispersed
Clacu02g1517 Clacu-Chr2:28630346 Clacu04g0634 Clacu-Chr4:20021859 1.00E-70 dispersed
Clacu02g1517 Clacu-Chr2:28630346 Clacu11g1749 Clacu-Chr11:28669297 4.70E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1517 - - - 0.0