Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1533 ATGGATGAGTTTTACAGGCTTAGCAACTCTGTTATAGCCTCATATTCTAATGGTGTTGTGGGAGGTGAAGCCATTGCAAGCACCAGCTGTGGAGGTATTCATGAAGCTTTAATGGTGGATAATGATATGCTTCAGCTTGAAGCTGAGGCCACCACTGGTTTGAACATGTCTGACATGATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAGCTGGTTTCTGCTTATATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCACCCTCCTAGGTCTTCTATTGAGTTGGGAACTGATCCCCAACTGGACAACTTCATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAACCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGTGACGTCGGATTCTCGCTCAGCCATGAATGACGAAGTAGCCGGGACTCCGGAGGAAGAACCGAGCAGCTATGGGGAGGTGGAAATGCCGGGAAATCACGAGTCGTTCTGCACGCAAAAAACGAACCAAGACCTGAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAGAAAAGAAAGAAGGAGAAGCTGCCAAAAGATGCAAGAATGGCTCTATTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATCGAAACTATCTGTTGTTACTGGTCTAGACCAAAAGCAAATCAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCTGAAGATATGCGATTCGTTCTCATGGACGGGGCGGGGGCCGGGGCCGGAGCCGGGGAATGCATTAAAGGATCAAATTTTTATGACAATGGAGAAACTGGAGGCCATAGTGAGGGTGATTACCGTGAGTATGATTTGAGGGCGGATTCAACCGAAGTTGATCGCGTATGCAAGGTGATCGACGAATTGTTTGCGTTAGATAGAAACATGGAGGCAGTTCTTGATGAGTGTGGTATAAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCGGCATTTCGATTCTTCTGTTGGGCTGCTCAGAAGCCAGGTTTTGCCCATGACTCCAAAACTTACAATATGATGATGACAATTTTGGGGAAGACAAGACAGTTTGAAACAATGGTGTCATTGCTTGAAGAAATGGCTGAAAAAGAGCTTTTGACAATGGAAACTTTCACCATTTGTTTCAAAGCATTTGCAGCTGCAAAAGAGAGGAAGAAAGCTGTTGGGGTCTTTGAGTTGATGAAGAAGTACAAGTATAAAGTGGGTGTAGAAACTATAAACTGCTTGCTTGATAGTTTAGGGAGGGAAAAGCTTGGTAAAGAGGCTCAAGCAGTTTTTGAGAAGTTACATGGTAGGTTTACGCCGAATTTGCAAACATACACAGTTTTGTTGAACGGTTGGTGTCGGGTGAGGAATCTAATGGAAGCTGGGAAGATATGGAATCTGATGATTGATGAAGGTTTTAAGCCTGATATTGTTGCTCACAATACCATGCTTGAAGGCTTGTTGAGGTGTAAGAAGAGGTCAGATGCTATCAAGTTGTTTGAGGTTATGAAAGCCAAGGGCCCATCTCCTGATGTCAAAAGCTACACGATTTTGGTTCGGGATTTCTGTAAGCAAACCAAGATGAAAGAAGCGGTTGAGTATTTTGAAGAAATGCAGGGAGCGGGATGTCGGCCTGATGCTGGAATCTACACATGTTTGATCACAGGGTTTGGGAATCAGAAAAGGATGGACATGGTTTATGGGCTGCTGAAAGAGATGAAGACAAAAGATTGCCCGCCTGATGGGAAGACCTACAATGCTCTAATCAAATTGATGACGAATAAGCGAATGCCCGATGATGCTGTTCGGATATACAAGAAGATGATTGAGAATGGCATTGAACCAACAATCCACACCTACAACATGATGATGAAGTCCTACTTTCAGACAAGGAATTACGACATGGGTGTTGCTGTTTGGGATGAGATGAAGCAAAAGGGGTGTTGCCCTGACGATAACTCGTATACCGTCTTTATCGGGGGGCTCATAAGTCAGGGACGTTGCAGCGAAGCGGGAAAGTATCTAGAGGAGATGATTGAGAAAGGAATGAAGGCTCCTCAGCTTGATTACAACAAATTTGCTGCTGATTTCTCTAGAGCTGGGAGACCTGATATTCTTGAAGAATTGGCTCAAAAGATGAAGTTTTCTGGCAAATTTGAAGCCTCCAATGTAATTGCAAGATGGGCTGAGATGATGAGGAAGAGGGTGAAGAGAAGAAATCCTACAAACATTATCAATGGTTACCAAAGCACTTAA 2451 43.29 MDEFYRLSNSVIASYSNGVVGGEAIASTSCGGIHEALMVDNDMLQLEAEATTGLNMSDMIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPPRSSIELGTDPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTVTSDSRSAMNDEVAGTPEEEPSSYGEVEMPGNHESFCTQKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSVVTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGAGAGAGAGECIKGSNFYDNGETGGHSEGDYREYDLRADSTEVDRVCKVIDELFALDRNMEAVLDECGIKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAHDSKTYNMMMTILGKTRQFETMVSLLEEMAEKELLTMETFTICFKAFAAAKERKKAVGVFELMKKYKYKVGVETINCLLDSLGREKLGKEAQAVFEKLHGRFTPNLQTYTVLLNGWCRVRNLMEAGKIWNLMIDEGFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQTKMKEAVEYFEEMQGAGCRPDAGIYTCLITGFGNQKRMDMVYGLLKEMKTKDCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIEPTIHTYNMMMKSYFQTRNYDMGVAVWDEMKQKGCCPDDNSYTVFIGGLISQGRCSEAGKYLEEMIEKGMKAPQLDYNKFAADFSRAGRPDILEELAQKMKFSGKFEASNVIARWAEMMRKRVKRRNPTNIINGYQST 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28780153 28788386 + ClG42_02g0153300.10 Clacu02g1533 243601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1533 816 SMART KNOX1_2 58 102 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu02g1533 816 Pfam PPR repeat 509 538 IPR002885 -
Clacu02g1533 816 Pfam PPR repeat 476 500 IPR002885 -
Clacu02g1533 816 Pfam PPR repeat 406 433 IPR002885 -
Clacu02g1533 816 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu02g1533 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Clacu02g1533 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Clacu02g1533 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Clacu02g1533 816 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Clacu02g1533 816 Gene3D Tetratricopeptide repeat domain 347 501 IPR011990 GO:0005515(InterPro)
Clacu02g1533 816 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Clacu02g1533 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Clacu02g1533 816 Gene3D - 222 293 - -
Clacu02g1533 816 CDD homeodomain 236 287 IPR001356 GO:0003677(InterPro)
Clacu02g1533 816 SMART ELK_2 204 225 IPR005539 GO:0003677(InterPro)
Clacu02g1533 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Clacu02g1533 816 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu02g1533 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Clacu02g1533 816 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu02g1533 816 SUPERFAMILY HCP-like 586 758 - -
Clacu02g1533 816 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu02g1533 816 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Clacu02g1533 816 MobiDBLite consensus disorder prediction 166 196 - -
Clacu02g1533 816 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu02g1533 816 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 329 675 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Clacu02g1533 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Clacu02g1533 816 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Clacu02g1533 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Clacu02g1533 816 Pfam ELK domain 204 225 IPR005539 GO:0003677(InterPro)
Clacu02g1533 816 Gene3D Tetratricopeptide repeat domain 502 638 IPR011990 GO:0005515(InterPro)
Clacu02g1533 816 Gene3D Tetratricopeptide repeat domain 639 812 IPR011990 GO:0005515(InterPro)
Clacu02g1533 816 Pfam PPR repeat family 680 727 IPR002885 -
Clacu02g1533 816 Pfam PPR repeat family 610 655 IPR002885 -
Clacu02g1533 816 Pfam PPR repeat family 540 589 IPR002885 -
Clacu02g1533 816 NCBIfam pentatricopeptide repeat 543 577 IPR002885 -
Clacu02g1533 816 NCBIfam pentatricopeptide repeat 509 542 IPR002885 -
Clacu02g1533 816 NCBIfam pentatricopeptide repeat 406 433 IPR002885 -
Clacu02g1533 816 NCBIfam pentatricopeptide repeat 614 646 IPR002885 -
Clacu02g1533 816 NCBIfam pentatricopeptide repeat 649 681 IPR002885 -
Clacu02g1533 816 NCBIfam pentatricopeptide repeat 719 749 IPR002885 -
Clacu02g1533 816 NCBIfam pentatricopeptide repeat 683 716 IPR002885 -
Clacu02g1533 816 NCBIfam pentatricopeptide repeat 579 612 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1533 Clacu-Chr2:28780153 Clacu08g1940 Clacu-Chr8:28411673 6.70E-67 dispersed
Clacu02g1533 Clacu-Chr2:28780153 Clacu05g2747 Clacu-Chr5:34935468 4.50E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47276 PF13812 PPR_3 1.20E-12 CL0020 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1533 - - - 0.0