Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1535 ATGGAATTTGAAGAAGCCTCTCTCTTGCAAAAAGTCTGTGCTCTTTACAACCAAATCTCAAGCCTCGCTAGCCTCGAGCCTTCAAAAAATGTCGACACTCTTTTCACTCAACTCGTCCTCACGTGCTCTCCACCTGCCCCTGGCCTTGATATTGCTTCTTTGTCTCAGCCACTTCAAGCCATGAGGGCTCATCTCATTCGCCTTTGTGCTAAAGCTGAAGCTCTTCTTGAACTTCATTTCTCTTCCATTTTGGCTTCCTCTTTTGATAATCCCATTTCTAACTTGTCTATCTTCCCTTACTACTCTAATTACTTGAAGCTCTCCCTTCTTGAGTTTGATATTCTTCGATCTCATTATCGTCGTGTCCCCGCTACCGTCGCGTTCCTTGGCTCTGGACCCCTCCCGCTCTCCTCCATTGTCTTGGCGTCTATTCATCTTAAGGGAACTATTTTCCACAACTTTGACATTGATCCAGCTGCAAACACCATGGCTAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTCCACACAACAGATGTAATGGAAGTGACAAAGGGATTAAAAGATTATGAAGTAGTTTTCTTAGCAGCATTGGTAGGATTAGAAGAGGAAGAAAAAGGAAGAGTTCTAAGGCATTTGGGGAAACATATGGCAGCTGGTGCTTATTTGATGCTAAGAAGTGCACATGGAGCTAGAGCATTTTTATATCCTGTTGTTGATATTTGTAACGTTGAAGCTTCTGGATTTGAGATTTTATCTGTGTTCCATCCCACTGATGAAGTTATAAACTCTGTTGTTATTGCAAGGAAGAAACTAGTGTTTGATCGAAACTCGATCGAGGATGAGGATGATGACGAGGACGACGAGAAGCAAGGTATATTAGTTAATACCTCATCTATTGTGTTGCCTGAGAAATGCTCTGGGTTTAATGGCTTTAGTCCCATGATTGAAGAGCAACTTTCTTGA 981 42.1 MEFEEASLLQKVCALYNQISSLASLEPSKNVDTLFTQLVLTCSPPAPGLDIASLSQPLQAMRAHLIRLCAKAEALLELHFSSILASSFDNPISNLSIFPYYSNYLKLSLLEFDILRSHYRRVPATVAFLGSGPLPLSSIVLASIHLKGTIFHNFDIDPAANTMASQLVCSDPDLSQRMIFHTTDVMEVTKGLKDYEVVFLAALVGLEEEEKGRVLRHLGKHMAAGAYLMLRSAHGARAFLYPVVDICNVEASGFEILSVFHPTDEVINSVVIARKKLVFDRNSIEDEDDDEDDEKQGILVNTSSIVLPEKCSGFNGFSPMIEEQLS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28799063 28800719 - ClG42_02g0153500.10 Clacu02g1535 243603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1535 326 Gene3D Vaccinia Virus protein VP39 9 276 IPR029063 -
Clacu02g1535 326 PANTHER NICOTIANAMINE SYNTHASE 3 4 283 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Clacu02g1535 326 Pfam Nicotianamine synthase protein 5 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Clacu02g1535 326 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 280 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1535 Clacu-Chr2:28799063 Clacu06g1426 Clacu-Chr6:25128417 4.60E-67 dispersed
Clacu02g1535 Clacu-Chr2:28799063 Clacu02g1536 Clacu-Chr2:28813125 2.10E-80 tandem
Clacu02g1535 Clacu-Chr2:28799063 Clacu03g1805 Clacu-Chr3:31800671 1.70E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1535 K05953 - csv:101203651 548.895