Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1535 ATGGAATTTGAAGAAGCCTCTCTCTTGCAAAAAGTCTGTGCTCTTTACAACCAAATCTCAAGCCTCGCTAGCCTCGAGCCTTCAAAAAATGTCGACACTCTTTTCACTCAACTCGTCCTCACGTGCTCTCCACCTGCCCCTGGCCTTGATATTGCTTCTTTGTCTCAGCCACTTCAAGCCATGAGGGCTCATCTCATTCGCCTTTGTGCTAAAGCTGAAGCTCTTCTTGAACTTCATTTCTCTTCCATTTTGGCTTCCTCTTTTGATAATCCCATTTCTAACTTGTCTATCTTCCCTTACTACTCTAATTACTTGAAGCTCTCCCTTCTTGAGTTTGATATTCTTCGATCTCATTATCGTCGTGTCCCCGCTACCGTCGCGTTCCTTGGCTCTGGACCCCTCCCGCTCTCCTCCATTGTCTTGGCGTCTATTCATCTTAAGGGAACTATTTTCCACAACTTTGACATTGATCCAGCTGCAAACACCATGGCTAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTCCACACAACAGATGTAATGGAAGTGACAAAGGGATTAAAAGATTATGAAGTAGTTTTCTTAGCAGCATTGGTAGGATTAGAAGAGGAAGAAAAAGGAAGAGTTCTAAGGCATTTGGGGAAACATATGGCAGCTGGTGCTTATTTGATGCTAAGAAGTGCACATGGAGCTAGAGCATTTTTATATCCTGTTGTTGATATTTGTAACGTTGAAGCTTCTGGATTTGAGATTTTATCTGTGTTCCATCCCACTGATGAAGTTATAAACTCTGTTGTTATTGCAAGGAAGAAACTAGTGTTTGATCGAAACTCGATCGAGGATGAGGATGATGACGAGGACGACGAGAAGCAAGGTATATTAGTTAATACCTCATCTATTGTGTTGCCTGAGAAATGCTCTGGGTTTAATGGCTTTAGTCCCATGATTGAAGAGCAACTTTCTTGA 981 42.1 MEFEEASLLQKVCALYNQISSLASLEPSKNVDTLFTQLVLTCSPPAPGLDIASLSQPLQAMRAHLIRLCAKAEALLELHFSSILASSFDNPISNLSIFPYYSNYLKLSLLEFDILRSHYRRVPATVAFLGSGPLPLSSIVLASIHLKGTIFHNFDIDPAANTMASQLVCSDPDLSQRMIFHTTDVMEVTKGLKDYEVVFLAALVGLEEEEKGRVLRHLGKHMAAGAYLMLRSAHGARAFLYPVVDICNVEASGFEILSVFHPTDEVINSVVIARKKLVFDRNSIEDEDDDEDDEKQGILVNTSSIVLPEKCSGFNGFSPMIEEQLS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28799063 28800719 - ClG42_02g0153500.10 Clacu02g1535 243603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1535 326 Gene3D Vaccinia Virus protein VP39 9 276 IPR029063 -
Clacu02g1535 326 PANTHER NICOTIANAMINE SYNTHASE 3 4 283 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Clacu02g1535 326 Pfam Nicotianamine synthase protein 5 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Clacu02g1535 326 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 280 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1535 K05953 - - csv:101203651 548.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1535 Clacu-Chr2:28799063 Clacu06g1426 Clacu-Chr6:25128417 4.60E-67 dispersed
Clacu02g1535 Clacu-Chr2:28799063 Clacu02g1536 Clacu-Chr2:28813125 2.10E-80 tandem
Clacu02g1535 Clacu-Chr2:28799063 Clacu03g1805 Clacu-Chr3:31800671 1.70E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g1535 . 1 275 Nicotianamine Synthase Gene Family AT1G09240 60.9 5.6e-94 341.3
Clacu03g1805 . 1 273 Nicotianamine Synthase Gene Family AT1G09240 59.3 6.2e-93 337.8
Clacu02g1536 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 57.8 3.7e-85 312.0
Clacu06g1426 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 54.0 6.5e-74 274.6
Clacu03g1805 . 3 273 Nicotianamine Synthase Gene Family AT1G56430 61.5 1.0e-98 357.1
Clacu02g1535 . 4 326 Nicotianamine Synthase Gene Family AT1G56430 55.8 1.4e-97 353.2
Clacu02g1536 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 58.5 4.4e-86 315.1
Clacu06g1426 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 53.0 1.8e-76 283.1
Clacu02g1535 . 1 275 Nicotianamine Synthase Gene Family AT5G04950 58.5 8.4e-90 327.4
Clacu03g1805 . 1 273 Nicotianamine Synthase Gene Family AT5G04950 55.4 5.5e-89 324.7
Clacu02g1536 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 55.9 4.3e-86 315.1
Clacu06g1426 . 18 281 Nicotianamine Synthase Gene Family AT5G04950 50.4 3.3e-70 262.3
Clacu02g1535 . 1 275 Nicotianamine Synthase Gene Family AT5G56080 59.4 1.2e-91 333.6
Clacu03g1805 . 1 273 Nicotianamine Synthase Gene Family AT5G56080 56.4 4.2e-89 325.1
Clacu02g1536 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 55.4 8.1e-85 310.8
Clacu06g1426 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 51.7 1.5e-70 263.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125