Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1536 ATGTGTTGCCAAGGTCTTCTTTTGGTTCAAAAAATCTCAGAACTTTACCACAAAATCTCCACTCTTGAAAGCCTCAAACCCTCTAAAGATGTCAACTCTCTCTTCTCTCAACTTGTTCTCATTTGCACCCCTCCCCCGTCTTCTCCGTCGTCCATCGACATCTCGGTGCTTTGCTCCGCCGTCCAAACCATGAGATCCCATCTCATCAAGCTCTGCGCCGAGGCCGAGGCACTTCTCGAGCATCACTACTCCACCATTTTAGCCTCTCACCAAAACCCACTTGACCATCTCTCCCTTTTCCCTTATTACTCCTACTATCTCAAACTAACCCACCTTGAATTCTCCATTTTGAACCACCACGCGCCCCACGCGCCACCCACCAAGGTGGCCTTTGTTGGCTCCGGTGCACTTCTGTTCTCGTCAATAATCATGGCCTCGAAGTACCTTCCAAAAACCGAGTTTCACAACTTCGACGTCGACTCGTCTGCCAATGCGAAAGCAGCAATGCTAGTAGCTGGCGATGCAGACTTGTCGAGGCGGATGGTGTTCCACACGACTAACATCATGGATGTTGTCTCAGACCAGTTGAGGAAATTTGAGGTAGTATTTTTGGCGGCGTTGGTGGGGATGGAGAGGGGAGAGAAGGTGAAAGTGATTGAGCATTTGAGGAAGAATATGGGAGGTGGCGCGTTGTTGATGTTGAGGAGCGCGTATGGTGCACGCGCGTTTCTTTATCCGGTGGTGGAAGCTTGTGATCTTCGAGGGTTTGAGATTCTTACAATGTTTCATCCCACGGATGAAGTTATTACTTCAATTGTGTTGGCACGATTATAA 834 48.92 MCCQGLLLVQKISELYHKISTLESLKPSKDVNSLFSQLVLICTPPPSSPSSIDISVLCSAVQTMRSHLIKLCAEAEALLEHHYSTILASHQNPLDHLSLFPYYSYYLKLTHLEFSILNHHAPHAPPTKVAFVGSGALLFSSIIMASKYLPKTEFHNFDVDSSANAKAAMLVAGDADLSRRMVFHTTNIMDVVSDQLRKFEVVFLAALVGMERGEKVKVIEHLRKNMGGGALLMLRSAYGARAFLYPVVEACDLRGFEILTMFHPTDEVITSIVLARL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28813125 28813958 - ClG42_02g0153600.10 Clacu02g1536 243604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1536 277 Pfam Nicotianamine synthase protein 7 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Clacu02g1536 277 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Clacu02g1536 277 PANTHER NICOTIANAMINE SYNTHASE 3 8 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Clacu02g1536 277 Gene3D Vaccinia Virus protein VP39 4 277 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1536 Clacu-Chr2:28813125 Clacu03g1805 Clacu-Chr3:31800671 1.50E-79 dispersed
Clacu02g1535 Clacu-Chr2:28799063 Clacu02g1536 Clacu-Chr2:28813125 2.10E-80 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1536 K05953 - csv:101219339 462.225