Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1553 ATGGCCAAAATTTTCAAAGGTTTTGTTCACAAAATTCAAGCTAAAGGAGAAAATCAGGATCGATCTACTGTCGACGTAGTACTATTATTTGCTGGAGCAAAAGGACACCATAAACCGCCGCCGGCCGGCGACCGGAGATTAGGGGCGTTGCGAGAATCGAACTCACGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAACGCCCTTTAGGTCAAGGTTTTTTTGGGCAGCGATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGAGCGTGAAAAACAGGAGGTTGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCCGATTGGGAAAAACCCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTAGTCAAGGATTCCGCAAATTACTTGGATCATATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTCTTGAACAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAACAACAAGAAGAAGAACAACGAAAGCGTGAGCGACGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTCCGTTCATCAAAGAAGTGA 849 45.7 MAKIFKGFVHKIQAKGENQDRSTVDVVLLFAGAKGHHKPPPAGDRRLGALRESNSRPLAPEARIIPLDQTPFRSRFFWAAMAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28906142 28908944 - ClG42_02g0155300.10 Clacu02g1553 243621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1553 282 Coils Coil 102 122 - -
Clacu02g1553 282 SMART ZnF_U1_5 161 195 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Clacu02g1553 282 Coils Coil 224 261 - -
Clacu02g1553 282 MobiDBLite consensus disorder prediction 217 282 - -
Clacu02g1553 282 Pfam Zinc-finger of C2H2 type 164 188 IPR013087 -
Clacu02g1553 282 Gene3D Classic Zinc Finger 159 196 - -
Clacu02g1553 282 MobiDBLite consensus disorder prediction 217 263 - -
Clacu02g1553 282 Coils Coil 196 216 - -
Clacu02g1553 282 FunFam zinc finger matrin-type protein 2-like 158 196 - -
Clacu02g1553 282 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 88 282 IPR040107 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0005681(InterPro)|GO:0046540(PANTHER)
Clacu02g1553 282 SUPERFAMILY beta-beta-alpha zinc fingers 160 205 IPR036236 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1553 K12848 - csv:101206387 326.25