Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1564 ATGGGGCATTTCTCCACCATGTTTAATGGGCTGGCAAGGTCATTTTCCTTCAAGAAAGGTAGAAATTCTGGGAGTCTAGGCAACGAGGGAGGGCGAGAAGCTGCAAAAGCCATGATAAAGGATGCAAAAAGGAAAGACTCGATATTATGCACCTCCGGTGTACTCAATGCAGAAGGTTCGGATACTTTTGCTTCAGTGTTCTCGAAGAAAGGCGAAAAAGGAGTAAACCAAGATTGCTGCATTGTATGGGAGGAATTTGGATGCCAAGAAGACATGATATTTTGTGGGATTTTCGATGGGCACGGACCATGGGGTCACTTTGTTGCAAAGACGGTAAGAGAATCATTGCCGCCTTCTTTGCTGTGCCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGGATTCAGAAAAGAAGCATCAGCGATTTGATATATGGAAGCATTCTTATTTAAGAACTTGTGCTGCCATTGATCACGAACTCGAGCAGCACCGTAAAATCGATACATTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGCGAACTGGTCGTTTTGGCCAACGTAGGTGACTCCCGAGCGGTTTTAGCTACTACTTCAGATGATGGAAGTATAGTACCGGTTCAGCTCACCGTTGATTTCAAACCAAACCTACCTCAGGAGGCTGAGCGGATAATTCAATGCAATGGGAGGGTATTTTGTTTAAGTGACGAGCCGGGAGTTCATAGGGTCTGGCTTCCCAACGAGGAAACCCCGGGATTGGCGATGTCGAGAGCCTTCGGTGATTATTGTATTAAAGAATTCGGACTCATTTCTGTGCCAGAAGTAACACATAGAAGTATAACCAGCAGAGACCAATTCATTATATTGGCCACTGATGGGGTATGGGATGTTGTCACCAACCAAGAAGCAGTGGAGATTGTATCGTCAACACCAAATCGAGCGAAATCGTCGAAACGTCTGGTCGAGTGTGCTGTTCGGGCATGGAAACGGAAGAGACGAGGCATTGCAATGGATGATATATCAGCTATCTGTCTCTTCTTCCACTCCTCATCAGAGCAAGATGATCACCTTGTATCCACAATATAG 1104 45.56 MGHFSTMFNGLARSFSFKKGRNSGSLGNEGGREAAKAMIKDAKRKDSILCTSGVLNAEGSDTFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKTVRESLPPSLLCHWQQGLAQAFLDPELDSEKKHQRFDIWKHSYLRTCAAIDHELEQHRKIDTFYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSIVPVQLTVDFKPNLPQEAERIIQCNGRVFCLSDEPGVHRVWLPNEETPGLAMSRAFGDYCIKEFGLISVPEVTHRSITSRDQFIILATDGVWDVVTNQEAVEIVSSTPNRAKSSKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSEQDDHLVSTI 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29032715 29034514 - ClG42_02g0156400.10 Clacu02g1564 243632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1564 367 FunFam Probable protein phosphatase 2C 34 54 355 - -
Clacu02g1564 367 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Clacu02g1564 367 SMART PP2C_4 52 351 IPR001932 -
Clacu02g1564 367 PANTHER PROTEIN PHOSPHATASE 46 352 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu02g1564 367 SUPERFAMILY PP2C-like 59 354 IPR036457 -
Clacu02g1564 367 Gene3D - 50 356 IPR036457 -
Clacu02g1564 367 Pfam Protein phosphatase 2C 87 328 IPR001932 -
Clacu02g1564 367 CDD PP2Cc 63 353 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0125 Clacu-Chr2:1330347 Clacu02g1564 Clacu-Chr2:29032715 6.20E-85 dispersed
Clacu02g1564 Clacu-Chr2:29032715 Clacu11g1155 Clacu-Chr11:16443496 1.30E-94 dispersed
Clacu03g1792 Clacu-Chr3:31650208 Clacu02g1564 Clacu-Chr2:29032715 2.90E-142 transposed
Clacu02g1564 Clacu-Chr2:29032715 Clacu06g0474 Clacu-Chr6:5517466 7.30E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1564 - - - 0.0