Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1566 ATGTCGACGGAGAGATTGATTTCCAGTGGTACAACTCCGTCGGAAGCTGAGCCGCCGAAGTTGGCTTCAGCGTCGCACTCGTTCCGGCAATGTGGAGAACCGGCTAGGGTTTTTGAGGAGCTGCCAATTGCTTCCATTGTATCGGTTTCACGGCCCGATACTGGAGATATCAGTCCCTTGCTGTTATCTTATACCATTGAAATTCAATACAAGCAGTTTAAATGGAGCTTAGTGAAGAAAGCATCACAAGTTCTATATTTACATTTTGCATTGAAGAGACGTGCATTTATCAAAGAACTTCACGAGAAACAAGAGCAGGTGAAAGAATGGCTTCACAACTTGGGAATAGTAGACCATGCAACTGTAGTTCATCACGATGACGAATCTGATGATGGGGCTTTTTCTTTGCATGATGAACAAACTACAAGAAACAGGAATGTTCCTTCTGTTGCTGCTTTACCCATCATTAAGCCAGCACTGGGAGGACAGGGGTCCATTGCAGACAAGGCAAAGCTAGCAATGAAAGGTTACTTAAATCACTTTTTTGGGAACTTGGATATTGTAAATTCTCGTGAGGTCTGCAAATTTTTAGAAGTCTCGAAGATGTCATTTGTAAGAGAACACGGCCCAAAGTTGAAAGAAGGTTACCTAATGGTGAAGCATTTAAAACAGCTCACAGGATCTGATTCTAGTATAAAATGTTTTTCATGCCATTGGTGCAGCTGCTGCATGTACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTTGCCTTGGTTGCTGATCCTATGGACACTAAACTTCTAGATATAATTGTTTTTGATGTGCTACCAACATTAGAAGAAAAGGAGGGATCCCAAGCATGCTTAGCATATCAAGTCAAGGAGCGCAATCCTTTACGTTATTCGTTTAAGGTTAGATGCGGAGATGGGGACGTGAGGTTCAGAACTACAAGTACCGCCAAAGTCAAAGAATGGGTCTCATCAATTAATGATGCTGGTTTTGGAACCAAAGATGGCTGGTGCCACCCTCATCGCTTTGGTTCTTTTGCTCCTCAGAGAGGTTTGAGTGATGATGAAAGCCAAGCTCAGTGGTTCATAGATGGCCGGGCAGCTTTTGAAGCAATCGCTTGCTCTATTGAGGCTGCAAAATCTGAGATATTCATCACTGGTTGGTGGCTTTGCCCTGAGCTTTACATGCGACGTCCTTTTCTCAATCATTCTTCATCACGGCTTGATGCATTGCTGGAAAAAAAGGCAAAAGAAGGTGTCAAGATTTACATCTTAATGTACAAGGAGGTTCCTATTGCTCTGAAAATTAACAGTATGTATGGTAAGAAGAGGCTTGTAAATATTCATGAGAACATTAAGGTACTACGTTCTCCTGATCATATGTCAACTGGAATTTACTATTGGTCACATCACGAAAAAATTGTCATCGTTGATCACCACATTTGCTTCATTGGAGGTTTGGATTTATGCTTTGGCCGCTATGATACAATGGAACATAAAGTGAATGATTTCCCTCCTCATATGTGGCCGGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCTTGGGAAGACACAATGAAAGATGAATTGGAGCGGGAGAAGTGTCCTCGAATGCCATGGCATGATGTTCACTGTGCTCTTTGGGGATCTCCATGCCGTGATATTGCTCGACACTTTGTTCAGAGGTGGAACCATGCCAAGAGAAACAAAGCCCCAAATGAAGAAAAAATACCTCTACTTATGCCTCAACATGACATGGTCCTTCCACATTACATGGGAAGAAGCACGGAGTTGAGCTTAAAAAATAATGACTCGGAGCAAGATCACCAGAGGCAGACCACAGATGATTTCTTTTCCTCTTTATCACCACAGGAAGATATTCCATTACTGATGCCTCCAGAAATTGGTGGACTTCCAGATTCTAACGTGCAAACAAATAGTCTTTGCATGAATCACAATTTTTTCAATCAGCCAATGGAGATACGGAGTAGTGTTATGGATTCTTTCCAAGCATACAACGTTGAACCATTGACCCAATTTGAACAGACAAATGGATTGTTAGATGAATTTGGATTTTTGGATGAGTTTGGTTCTTTTGGTCATCTGAGGGAAGCTACTATTGATACTCCACCATATATGAAAACTTCAAATGATTGGTTGGAAACTGAACACGAAAGTAACCATGTTGTTGCTATAAACGAGGCCAAAGAAATTGGTCCACTTACTACTATCAATTGTCAGGTAATAAGAAGTGCCAGCCAGTGGTCAGCAGGAACAAGCAAACCAGAAGCAAGTATTCATGCTGCTTATTGTTCTGCCATTCAAGAGGCAAAACACTTCATCTACATTGAGAACCAGTTTTTCATATCAGGTTTATCAGGGGATGAGACCATACAAAATCGGGTTCTGGATGCACTATACCAACGTATATGGCTGGCTCATAAAGAAAAACAATGTTTTAGAGTTATTGTTGTTTTACCACTCTTACCTGGATTTCAGGGTGGTGTAGATGATAATGGTGCAGCAACTGTTCGAGCCTTGATGCATTGGCAGTACCGAACAATTAGTTGGGAAAAAACATCGATACTGTACCGTCTCAATCTTTTATTGGGTCCTAGAACACAAGATTATATTTTGTTTTGTGGCCTTCGATCATATGGCAGACTATTTGATGGTGGTCCAATTGCCACAAGTCAGGTATATGTGCATAGCAAATTGATGATAATTGATGATTGCATTACCTTTATTGGTTCCTCCAATATTAATGATAGAAGTTTACTTGGATCCAGAGATTCTGAGATTGGGGTAATTATTGAGGATAAAGAGTTTGTTGATTCATCTATGAATGGAAAACCTTGGAAAGCTGGAAAATTCGCCCATAGTCTACGATGCTCTTTGTGGTGTGAGCACCTCGGTCTTCATCTTGGAGAGGTCAGTCAAATCCTTGATCCTGTAGTAGAAGCAACATACAAAGATTTATGGTTAGCTACGGCAAAGGAAAACACAGCAATATATGAAGATGTTTTTTCTTGCATCCCCAGTGACAACATAATCTCAAGATCATCCTTGCGCCAAAGTTTGGCCGATTTGAAGGGCAAACTTGGTCATAACACACTAGATTTAGGAATAGCTGCTGAGAAGATAGAAAGCTGTGAAAATAGGGAAGTAAAGATGATAGATCCAATGGAGAGACTGAGGTGTATTAGGGGACATCTTGTCTGTTTTCCATTGAAGTTCTTGTGGCAAGAAGATCTCAGACCAGGGTTCATTGAGAAGGCGCGAATCGGTAGAGATCAGAGTACTTTTTGTAAGAAAGAGGATTGTACTGGATGGCTTCAGCTGCAATAA 3375 41.07 MSTERLISSGTTPSEAEPPKLASASHSFRQCGEPARVFEELPIASIVSVSRPDTGDISPLLLSYTIEIQYKQFKWSLVKKASQVLYLHFALKRRAFIKELHEKQEQVKEWLHNLGIVDHATVVHHDDESDDGAFSLHDEQTTRNRNVPSVAALPIIKPALGGQGSIADKAKLAMKGYLNHFFGNLDIVNSREVCKFLEVSKMSFVREHGPKLKEGYLMVKHLKQLTGSDSSIKCFSCHWCSCCMYNWKKVWAVLKPGFFALVADPMDTKLLDIIVFDVLPTLEEKEGSQACLAYQVKERNPLRYSFKVRCGDGDVRFRTTSTAKVKEWVSSINDAGFGTKDGWCHPHRFGSFAPQRGLSDDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYMRRPFLNHSSSRLDALLEKKAKEGVKIYILMYKEVPIALKINSMYGKKRLVNIHENIKVLRSPDHMSTGIYYWSHHEKIVIVDHHICFIGGLDLCFGRYDTMEHKVNDFPPHMWPGKDYYNPRESEPNSWEDTMKDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRNKAPNEEKIPLLMPQHDMVLPHYMGRSTELSLKNNDSEQDHQRQTTDDFFSSLSPQEDIPLLMPPEIGGLPDSNVQTNSLCMNHNFFNQPMEIRSSVMDSFQAYNVEPLTQFEQTNGLLDEFGFLDEFGSFGHLREATIDTPPYMKTSNDWLETEHESNHVVAINEAKEIGPLTTINCQVIRSASQWSAGTSKPEASIHAAYCSAIQEAKHFIYIENQFFISGLSGDETIQNRVLDALYQRIWLAHKEKQCFRVIVVLPLLPGFQGGVDDNGAATVRALMHWQYRTISWEKTSILYRLNLLLGPRTQDYILFCGLRSYGRLFDGGPIATSQVYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVDSSMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVSQILDPVVEATYKDLWLATAKENTAIYEDVFSCIPSDNIISRSSLRQSLADLKGKLGHNTLDLGIAAEKIESCENREVKMIDPMERLRCIRGHLVCFPLKFLWQEDLRPGFIEKARIGRDQSTFCKKEDCTGWLQLQ 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29056899 29069832 - ClG42_02g0156600.10 Clacu02g1566 243634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1566 1124 SUPERFAMILY Phospholipase D/nuclease 747 955 - -
Clacu02g1566 1124 PIRSF PLD_euk 39 626 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Clacu02g1566 1124 PIRSF PLD_euk 715 1107 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Clacu02g1566 1124 SMART pld_4 907 934 IPR001736 GO:0003824(InterPro)
Clacu02g1566 1124 SMART pld_4 472 499 IPR001736 GO:0003824(InterPro)
Clacu02g1566 1124 SUPERFAMILY PH domain-like 211 335 - -
Clacu02g1566 1124 CDD PLDc_vPLD1_2_yPLD_like_1 365 509 - -
Clacu02g1566 1124 SMART PH_update 211 339 IPR001849 -
Clacu02g1566 1124 SUPERFAMILY Phospholipase D/nuclease 341 592 - -
Clacu02g1566 1124 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 907 934 IPR001736 GO:0003824(InterPro)
Clacu02g1566 1124 ProSiteProfiles PH domain profile. 210 337 IPR001849 -
Clacu02g1566 1124 Gene3D Endonuclease Chain A 357 600 - -
Clacu02g1566 1124 FunFam Phospholipase 741 961 - -
Clacu02g1566 1124 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 472 499 IPR001736 GO:0003824(InterPro)
Clacu02g1566 1124 CDD PLDc_vPLD1_2_yPLD_like_2 767 951 - -
Clacu02g1566 1124 Gene3D - 201 337 IPR011993 -
Clacu02g1566 1124 Pfam PLD-like domain 909 954 IPR025202 -
Clacu02g1566 1124 MobiDBLite consensus disorder prediction 1 18 - -
Clacu02g1566 1124 Pfam Phospholipase D Active site motif 474 499 IPR001736 GO:0003824(InterPro)
Clacu02g1566 1124 CDD PH_PLD 188 335 - -
Clacu02g1566 1124 MobiDBLite consensus disorder prediction 1 25 - -
Clacu02g1566 1124 Gene3D Endonuclease Chain A 721 968 - -
Clacu02g1566 1124 PANTHER PHOSPHOLIPASE D 191 1089 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1566 Clacu-Chr2:29056899 Clacu10g0341 Clacu-Chr10:4306257 3.30E-32 dispersed
Clacu02g1566 Clacu-Chr2:29056899 Clacu06g0475 Clacu-Chr6:5534722 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1566 K01115 - csv:101220522 2101.63