Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1638 ATGGCATTAGAGGCTGTGGTTTTTTCTCAAGATCCATTAAATTACAATGGAAGCAAAGATCTTTACTCTTTGTTTGGAGGAGGAATCTGGGCAAATGGAAGCTTTGAATATCCTGAAATCCCTCATGATTTTCTCGAGAACCAAACAGAAAATTTCCCATTTGAAGATTGGAACTCAGCCTCCTCTGTTTTCGTTCCTAATCCTTCCCCCGAAGCTGCCGTTTCCAGAAATGGGTATCTCTTCAACGACCCAAATCCGCCATTAGAGGCTGAATCAACAACTCCAAATTCAATTCGACCCAGAAAACGAAGACCCAAATCCCGCAAGAACAAAGAGGAAATCGAAAATCAGAGAATGACTCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAGTATCTCTCTGTTCTTCGATCTTTAATGCCAGAGTCTTATGTCCAAAGGGGAGATCAAGCTTCGATTATTGGGGGTGCAATTAATTTTGTGAAGGAGCTGGAACAGCAAGTTCAAGTTCTATCCACAATGGAAACTAAGGGGAAGAATAATTCAGAAGGGTGTTGTGATTCAAATTCAAAAATCCCTTTCACAGAGTTCTTCAGCTTCCCTCAGTTCAAAGCAATGGAGGGTTGTTGTTCAGTGAGTGAAAATGAGAACCAATGCTCTTCCACCATTGCTGACATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATAAGGTCAAAGAGAAGGCCTAAACAAATCTTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTCTCTGTTCTTCATCTCAATATCTCTACTATCAACCAAATTGCTCTTTACTGTCTCAGTGTCAAGGTTGAAGATGATTGCAAGCTGACTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAGTTGCTTAGTAGAATAGAAGAAGATTCACTTATGAACTGA 948 39.98 MALEAVVFSQDPLNYNGSKDLYSLFGGGIWANGSFEYPEIPHDFLENQTENFPFEDWNSASSVFVPNPSPEAAVSRNGYLFNDPNPPLEAESTTPNSIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKGKNNSEGCCDSNSKIPFTEFFSFPQFKAMEGCCSVSENENQCSSTIADIEVTMVENHANLKIRSKRRPKQILKIVAGLHSLSLSVLHLNISTINQIALYCLSVKVEDDCKLTSVDEIASALHQLLSRIEEDSLMN 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29819617 29821002 + ClG42_02g0163800.10 Clacu02g1638 243706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1638 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
Clacu02g1638 315 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
Clacu02g1638 315 MobiDBLite consensus disorder prediction 78 114 - -
Clacu02g1638 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 177 IPR036638 GO:0046983(InterPro)
Clacu02g1638 315 Gene3D - 107 195 IPR036638 GO:0046983(InterPro)
Clacu02g1638 315 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
Clacu02g1638 315 PANTHER MAX DIMERIZATION, MAD 2 307 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1638 Clacu-Chr2:29819617 Clacu03g1717 Clacu-Chr3:30958033 6.40E-58 dispersed
Clacu02g1638 Clacu-Chr2:29819617 Clacu08g1291 Clacu-Chr8:22829926 8.10E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47279 PF00010 HLH 7.70E-10 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1638 - - - 0.0