Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1673 ATGGGATGTATAATTAGCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCCAAGAATAAGAAGGAGAAGATTTCTGAATGTGGTGATGATTTGGAAAGAAAAGAAGCTGGTGTGGCTGTTGTTGATGTTGCTCAGGAGGAAGAGCATGGCCATGGGGCTCAGCCCTTGACAAAAGAGCAGAGAAGAAAATTGAAACCTAACCCCAGGCTGAGTAATTTGCCAAAGCAATCTCAGGGCGAGCAGGTGGCTGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGGGAGGCACTCAGTGGTTGGATTCCGAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATATACTGACTGGTAAGGTCGTTGCACTGAAGAAGGTACGTTTTGACAATTTAGAGCCAGAAAGTGTAAGATTTATGGCCAGAGAGATTCTCATTTTGCGACGCCTAGATCATCCTAATGTTGTAAAGCTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTCGTATTTGAGTACATGGAGCATGATTTAGCTGGTCTTGCTGCAAATCCATCTATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGCAACAACTTCTATCAGGACTTGAGCATTGTCACAGCCACAGGGTGCTTCATCGCGATATTAAGGGTTCAAATCTTCTTATTGATGGTGAAGGGTTGCTTAAGATTGCTGACTTTGGACTAGCTACTTTCTTTGATCCAAAACACAAGCACCCATTGACTAATCGTGTTGTAACCTTATGGTATCGATCCCCCGAGCTTCTACTTGGTGCAACTCACTATGGTGTAGGCATCGACCTTTGGAGTGCAGGTTGTATTTTAGCTGAGTTATTAGCTGGGAGGGCCATAATGCCCGGCCGTACAGAGGTTGAGCAACTACATAAGATATTCAAGCTGTGTGGCTCAGCTTCAGATGAATATTTAAAGAGGGCAAAGTTGCCAAATGCAGCCTTATTTAGACCCCGAGAACCTTATAAGAGATGTATAAAAGAGACTTTTAAGGATTTCCCACCATCATCATTTCCCCTTATAGAAACACTTCTTGCAATTGACCCAGCTGAGAGAATGACAGCTACAGATGCATTGAAGAGCGAGTTTTTCACTTCAGAACCTTATGCTTGTGAACCTTCTAGCCTCCCCAAATATCCACCTAGTAAGGAGATGGATGCTAAACGACGGGATGATGAAGCTCGGAGACAAAGAGCAGCAAGTAAATTGCAGAATGATCGTGTGAAGAAGACACACACACGTAACCGTGCTGGTAGGGCCATACCTGTTCAAGGAGCCAATGCAGAACTCCAATCAAATATTGATAGACGGCGTCTAATTACTCATGCAAATGCAAAGAGCAAGAGCGAAAAGTTCCCCCCTCCACATCAAGATGGGGCACTCGGGTTCACATTGGGATATTCACGTCATATTGATCCAGCTGTTATTCCTTCTGATGTTCCATTTAGCTCCACATCATTTGGCTATCCAAACGAACTGGACCAAGCCTGGTCGGGTCCACTAGTTCAGTCTTCTAAAATCGGTGCTCAAAGGCAGAAGCATTTGGGAGGTGATGCAAAAGAACAGCAATCTTCAGTTAAAGGAAAGAAGGCAGCATGA 1686 44.01 MGCIISREVASRNLADSKNKKEKISECGDDLERKEAGVAVVDVAQEEEHGHGAQPLTKEQRRKLKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGEGLLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLAGRAIMPGRTEVEQLHKIFKLCGSASDEYLKRAKLPNAALFRPREPYKRCIKETFKDFPPSSFPLIETLLAIDPAERMTATDALKSEFFTSEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRAASKLQNDRVKKTHTRNRAGRAIPVQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVIPSDVPFSSTSFGYPNELDQAWSGPLVQSSKIGAQRQKHLGGDAKEQQSSVKGKKAA 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30168315 30173996 - ClG42_02g0167300.10 Clacu02g1673 243741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1673 561 PANTHER CELL DIVISION PROTEIN KINASE 108 393 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Clacu02g1673 561 CDD STKc_CDK9_like 109 393 - -
Clacu02g1673 561 SMART serkin_6 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1673 561 MobiDBLite consensus disorder prediction 542 561 - -
Clacu02g1673 561 MobiDBLite consensus disorder prediction 529 561 - -
Clacu02g1673 561 MobiDBLite consensus disorder prediction 43 80 - -
Clacu02g1673 561 MobiDBLite consensus disorder prediction 411 440 - -
Clacu02g1673 561 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Clacu02g1673 561 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Clacu02g1673 561 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1673 561 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1673 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1673 561 SUPERFAMILY Protein kinase-like (PK-like) 104 398 IPR011009 -
Clacu02g1673 561 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Clacu02g1673 561 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Clacu02g1673 561 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Clacu02g1673 561 MobiDBLite consensus disorder prediction 400 444 - -
Clacu02g1673 561 MobiDBLite consensus disorder prediction 43 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1673 Clacu-Chr2:30168315 Clacu05g0668 Clacu-Chr5:5621629 1.10E-225 dispersed
Clacu04g0659 Clacu-Chr4:20414290 Clacu02g1673 Clacu-Chr2:30168315 1.50E-48 transposed
Clacu05g2358 Clacu-Chr5:31982637 Clacu02g1673 Clacu-Chr2:30168315 3.20E-59 transposed
Clacu02g1673 Clacu-Chr2:30168315 Clacu03g1683 Clacu-Chr3:30590190 3.60E-245 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73345 PF00069 Pkinase 2.20E-67 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1673 K08819 - csv:101217497 1086.63