Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1686 ATGGATGGACTCTCAGATCTTGAGCTTGATTGCTCTGAATTTGTTGAAGTTGATCCCACTGGGAGATATGGCAGATACAATGAAATTTTGGGAAAAGGAGCTTCAAAAACAGTTTACAGAGCATTTGATGAATATGAAGGAATTGAGGTCGCTTGGAATCAAGTGAAACTTTATGATTTCTTGCAAAGTCCTGAAGATCTGGAAAGACTTTACTGTGAGATTCATCTTTTGAAGACATTGAAGCATAGAAATATAATGAAATTCTATACTTCTTGGGTTGATATTGCCAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGCACTCTCAGGCAGTATAGGCTGAAGCATAAGAGAGTTAATATTAGAGCGGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTGTAATCCATAGAGATCTCAAGTGTGACAATATCTTTGTTAATGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGACTTGCAGCAATCCTCAGGAAATCTCATGCTGATCATTGTGTGGGGACACCGGAGTTTATGGCTCCAGAAGTGTATGCAGAGGCATACAATGAATTAGTCGATATTTACTCATTTGGAATGTGCATTCTGGAGATGATAACTTTTGAATATCCATACAGCGAATGCACACATCCTGCTCAAATCTATAAGAAAGTCATATCTGGGAAAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGGCAATTCATTGATAAGTGTTTGGCATCGGTTTCATTTAGGCTCTCGGCAGCGGAGCTTTTGAATGACCCTTTTCTTCAAATTGATAATGGTGAATACGATCTAAGACCTGTTGATTATGGAAGAGGATTGGATGACGTTTGCCCTCTTATAAGACAACCTTATCTAGAACTTCGTAGAAGTGACAGCTCCTTTTGTAATGGATATCCATATGATTATAGTTTTGAAGCTTCAAGTGAGTCAGGTTATCATCCAATTGATAATGAAACCAATGGGATTGAACTTTTTGAGTATTGTGAAGGTGAACATTCTGAGGATGTTGATATTAGCATTAAAGGGAAGATGAGAGAAGATGGTGGCATCTTCTTAAGACTTAGAATTGCAGATAAAGAAGGGCGTATCAGGAACATTTATTTCCCATTTGATGTCGAGACAGATACAGCATTAAGTGTAGCAACAGAAATGGTTGCAGAGCTTGATATTACAGATCAAGACGTGACCAGAATTGCTGATATGATTGACGGAGAAATTGCTTCCTTGGTGCCTGAATGGAGGCCAGGTCCGGGAATTGAGGAAACGCCCCGCTTTGCAAATCAAAGCTATTGTCATAATTGTTCTACTACTACTTACAGCAATGCATCAAATGGTCTCTTGTTAAGAAATCCCGAGGGAAAGAACTCAGAGGTAGCTCAATGCTGTGGACATCGGTATGCTTCGATGCATGGGCGTTTTGAGGAGATAATGTACCAAGCTGACGAGTCTGAGCATCATACAGCAGAGGGTGCACCAAATGTGTCGAGTCATTCCGATTGCCTGAATTATCCTGAAATATGGGGACATCATGAAAGCCGTGAACTTAGTTCAATGAGCTCACGACAAAGCCATTCGGATGAAGATTACGAGAAAACAGATCAACCAGTTACAGTCATGGACACAAAAGAAATGATAATGGAAAGTAAAACTGCTCCTCATACGAGACGTACGCTTAGGAGCCTGATGAATTCCCTTTCTTTCTCAGAAACCGCTTCTCCTCCAGATATTAATGAGAATGATGTCCAACAAGAAATGAGATGGATTAAAGCCAAGTACCAAATAGAATTAAGCAAGCTCAGAGATCAACAGTTAAATCTTTCTTCAAAATCTTCAAGTTTTGAAGACGGGCAACAAAAAATGGAAAATGGGACTCTTCAAGGCAACCACAACCAAATCCTTGACAGGTCTGTTCAAGACACGAACCAAAGTAGTACTGGTAGCCATGTTTATATCGATAATAGCTGTTACAGTATAGACGCGCACAACCAAAGGGCTCAAAATCGCAAGGCTGTGGAGTCCCCTATTGTGGAGAAAGTTGCCACTGCCAAAAATGCCTGCAATGGTTCATTGCTTCCAAGCTCCCTTCATAGAACAATCTCTCTCCCAGTTGATGCTGTTCATATATAA 2205 40.41 MDGLSDLELDCSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFIDKCLASVSFRLSAAELLNDPFLQIDNGEYDLRPVDYGRGLDDVCPLIRQPYLELRRSDSSFCNGYPYDYSFEASSESGYHPIDNETNGIELFEYCEGEHSEDVDISIKGKMREDGGIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIEETPRFANQSYCHNCSTTTYSNASNGLLLRNPEGKNSEVAQCCGHRYASMHGRFEEIMYQADESEHHTAEGAPNVSSHSDCLNYPEIWGHHESRELSSMSSRQSHSDEDYEKTDQPVTVMDTKEMIMESKTAPHTRRTLRSLMNSLSFSETASPPDINENDVQQEMRWIKAKYQIELSKLRDQQLNLSSKSSSFEDGQQKMENGTLQGNHNQILDRSVQDTNQSSTGSHVYIDNSCYSIDAHNQRAQNRKAVESPIVEKVATAKNACNGSLLPSSLHRTISLPVDAVHI 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30300477 30303848 - ClG42_02g0168600.10 Clacu02g1686 243754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1686 734 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 630 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Clacu02g1686 734 FunFam probable serine/threonine-protein kinase WNK9 374 458 - -
Clacu02g1686 734 Gene3D - 374 441 - -
Clacu02g1686 734 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Clacu02g1686 734 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1686 734 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1686 734 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 432 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Clacu02g1686 734 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Clacu02g1686 734 Gene3D Phosphorylase Kinase; domain 1 10 105 - -
Clacu02g1686 734 CDD STKc_WNK 22 281 - -
Clacu02g1686 734 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Clacu02g1686 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1686 734 MobiDBLite consensus disorder prediction 539 559 - -
Clacu02g1686 734 SMART serkin_6 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1686 734 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1686 Clacu-Chr2:30300477 Clacu06g0607 Clacu-Chr6:7007267 1.50E-227 dispersed
Clacu02g1686 Clacu-Chr2:30300477 Clacu03g0309 Clacu-Chr3:3611049 1.60E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73346 PF00069 Pkinase 1.80E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1686 K08867 - csv:101219552 1362.82