Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1719 ATGAATGCCAATACCCATGTGATGTTATCTCTTTTCTTCGTCTTGTTAGGGCTTTTCAATGGCGTTTATTCTGCTTCTGTTCTTGCTCCACCTCCAGATCCGCCATTGCTGTTGCGTTGTGGTTCTAACGATGAGGCCACTGATGATAATGGCCGAAAATGGACCTCTGATTCTAAATTTCTCGACCCTAAAAATACCTTAGCCGCACCTGCTGGATTTCAAGATCCGTCAATGACTTCGCAAGTTCCGTATACGGAAGCTAGGGTTTTCACCGCCGAGACGGCGTATAAATTTCCGATAAAACCTGGTAACCGTTACTGGCTTCGACTGCATTTTTACCCTTCTATATACGGACCTCATGATTCTGCACATTCTTATTTCACCGTCGCTGCGAATGATTTAATCCTTGTGAAGAATTTCAGTGCTTATCTCACATGTCAGGCCTTTACTCAGGCCTACATTATTCGCGAATTTACTCTTGCGGCTTCGGAATCTGAATCTTTGAATTTGACATTCACGCCTGTTTCTGGATTTGCTTTTGTCAATGGGATTGAATTGATTCAAATGCCTGAGATATTTGGGGAGGCTATAATGGTGGGTGCAAGGGAGCAGACAATGGATGTTACGGCGTCGAATATGCAGACGATGGTGAGATTGAACGTTGGCGGGAGCTACATTTCTCCCGCGAACGATTCCGGGCTGAGTAGAGCATGGTACGATGATTATCCTTATCTTTTTGGTGCTTCTGAGGGTGTTGTGATGGAAGCTTCTAAGAGATTGGTGATTGATTATAAAGATATGCCAAAGTATATTGGGCCTGTGGAACTTTACAAGTCTTTGAGATCAATGGGGTCAGCTAAAGATTTGAATGCGAATTACAATCTCACATGGTTGTTTCCTAATATTGATCCAGGGTTTATGTATCTTGTGAGGTTGCATTTCTGTGATCTGTCTTTGAGTAGGCCAAATCAGGTGGTGTTTGATGTGTTCATCAACAATCAAACTGCGGAAGCAAATGGGATTGATGTGATAGCTTGGGCGGGCGCTAGGGGGGTTCCGAAATTCAGGGATTATGTTGTGTTTTCTAATGAAGCACCAACGATGCAGCAAATTTGGCTGGCAATGCATCCTAAGATGTCAGAGGCACCCGAATTTGCGGATGCTATGTTGAATGGGGTTGAGATATTCAAGCTCGAATCCGAGAAGAACTTGGCAGGGAAGAATCCTCAACCCTCCGCCTTTAGGATGAAGGTTGAGGCTGAAACAGAGAGAAATTTTGAAGCAAAGGGCAACAATGTTGAAGTGATTGGTGGAGCTGCAGGGGGTGCTGCTGCGTTCGTTGTGGTGGCACTTTGCTTTGCAGTGTACCAAAGGAAGAGTAGAATGCCAGGGACTGATTCACACACAACTAGTTGGTTACCGATCTATGGGAATTCGCATTCGAGTGGGAGCAAATCGACAGTGTCTGGGAAGAGTACGGCAAGTAATTTGGCTCAAGGTTTGGCTCGACATTTCTCGCTTCCTGAGATTTTACATGCTACCAAAAACTTTAGTGAATCTAATGTGATTGGGGTTGGAGGATTTGGGAAGGTGTACAAGGGAGTGATTGATGGAGGGACAAAAGTTGCTATTAAAAGGTCAAACCCATCATCAGAACAAGGCGTTCACGAGTTCCTTACAGAAATTGATTTGCTTTCGAAGCTGAGGCACAAACATTTGGTGTCCTTGATTGGTTTTTGTGATGAAGAGAATGAGATGTGTTTAATTTATGATTACATGGGTTTAGGAACTCTGAGGGAACATTTGTATAAGACCAACAACAAAACTCGTCTCTCATGGAAGCAAAGGCTGGAGATTTGTATTGGAGCAGCTAGGGGACTTCATTACCTTCACACAGGAGCACAATATACCATTATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGAAAACTGGGTTGCAAAGGTTTCCGATTTTGGGCTCTCGAAAACTGGTCCGAACATGGCTAATGGTCATGTTAGCACGGTAGTAAAGGGTAGCTTTGGCTACTTAGATCCGGAATACTTTCGAAGGCAACAACTGACTGAAAAATCTGATGTCTATTCATTTGGAGTTGTCCTGTTTGAAGTGTTATGTGCAAGGCCTGCTCTAAATCCAAGCCTACCGAAGGAACAGGTTAGTCTTGCAGATTGGGCGTTGCATTGTAAACGCAAAGGATTTCTCGAGGATCTCATCGACCCCCACCTCAAAGGGAAAATCACCCCTGAAAGCTTGAAGAAGTTTGCAGATGCTGCTGAGAAATGTCTTGATGACCATGGAGCTGAGCGACCGTCTATGGGCGATGTGTTATGGAACCTTGAATTTGCTCTCCAACTTCAGGAAAGTGCTGATGGTGGTTCGAGTCATAACTCGAGGATACACGAGGAAGATAGCCAGAGAAACCAAGACATGGCTGCACATTACAACAATCTCAGCCTTGGAAGTGAGCAAGAGTTACTTCAATCTAATGAACAAAACAGTACTGCAATCTTCTCTCAACTTGTCCATCCGACAGGCCGATAA 2568 44.04 MNANTHVMLSLFFVLLGLFNGVYSASVLAPPPDPPLLLRCGSNDEATDDNGRKWTSDSKFLDPKNTLAAPAGFQDPSMTSQVPYTEARVFTAETAYKFPIKPGNRYWLRLHFYPSIYGPHDSAHSYFTVAANDLILVKNFSAYLTCQAFTQAYIIREFTLAASESESLNLTFTPVSGFAFVNGIELIQMPEIFGEAIMVGAREQTMDVTASNMQTMVRLNVGGSYISPANDSGLSRAWYDDYPYLFGASEGVVMEASKRLVIDYKDMPKYIGPVELYKSLRSMGSAKDLNANYNLTWLFPNIDPGFMYLVRLHFCDLSLSRPNQVVFDVFINNQTAEANGIDVIAWAGARGVPKFRDYVVFSNEAPTMQQIWLAMHPKMSEAPEFADAMLNGVEIFKLESEKNLAGKNPQPSAFRMKVEAETERNFEAKGNNVEVIGGAAGGAAAFVVVALCFAVYQRKSRMPGTDSHTTSWLPIYGNSHSSGSKSTVSGKSTASNLAQGLARHFSLPEILHATKNFSESNVIGVGGFGKVYKGVIDGGTKVAIKRSNPSSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLIYDYMGLGTLREHLYKTNNKTRLSWKQRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMANGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGFLEDLIDPHLKGKITPESLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGSSHNSRIHEEDSQRNQDMAAHYNNLSLGSEQELLQSNEQNSTAIFSQLVHPTGR 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30657171 30659738 + ClG42_02g0171900.10 Clacu02g1719 243787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1719 855 Pfam Protein tyrosine and serine/threonine kinase 520 781 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1719 855 Pfam Malectin-like domain 39 397 IPR024788 -
Clacu02g1719 855 SMART serkin_6 517 791 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1719 855 FunFam FERONIA receptor-like kinase 35 190 - -
Clacu02g1719 855 FunFam FERONIA receptor-like kinase 211 399 - -
Clacu02g1719 855 Gene3D - 211 399 - -
Clacu02g1719 855 Gene3D - 36 190 - -
Clacu02g1719 855 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524(InterPro)
Clacu02g1719 855 Gene3D Phosphorylase Kinase; domain 1 478 592 - -
Clacu02g1719 855 SUPERFAMILY Protein kinase-like (PK-like) 502 786 IPR011009 -
Clacu02g1719 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1719 855 FunFam receptor-like protein kinase FERONIA 479 592 - -
Clacu02g1719 855 ProSiteProfiles Protein kinase domain profile. 517 791 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1719 855 FunFam Receptor-like protein kinase FERONIA 593 808 - -
Clacu02g1719 855 CDD STKc_IRAK 523 789 - -
Clacu02g1719 855 Gene3D Transferase(Phosphotransferase) domain 1 593 815 - -
Clacu02g1719 855 PANTHER OS07G0166700 PROTEIN 505 796 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1719 Clacu-Chr2:30657171 Clacu11g2025 Clacu-Chr11:31231577 1.30E-177 dispersed
Clacu02g1719 Clacu-Chr2:30657171 Clacu04g0683 Clacu-Chr4:20783621 4.90E-238 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73348 PF12819 Malectin_like 9.00E-34 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1719 - - - 0.0