Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1735 ATGATGGCGAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCGGGAGTTGATCATACATCGACCAGCTCCTCCACCATGAGAAAACCAGATCTGGGAATCTCCATGAACGACAACGGTGGACCCGTTAACAGCGGTGGTGTCGATGACGATGACGATAGAGATAACGGTGGTGATGAACCTAAAGAAGGAGCTGTCGAAGTTCCAACGCGCCGTCCTCGTGGCCGTCCACCGGGCTCCAAGAATAAGCCTAAGCCTCCTATCTTCGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATCGCGGAAAGCATTGCTCAATTTGCTCGACGGCGACAGAGAGGTGTTTCTGTGCTTAGTGGCAGCGGTACGGTAACGAATGTCACACTCCGGCAACCATCTGCGCCCGGTGCAGTCTTAACCCTTCACGGCCGGTTCGAGATTCTTTCTTTGACTGGAACTTTCCTCCCCGGACCAGCCCCACCCGGGTCAACTGGACTAACAATCTACTTGGCCGGTGGACAAGGGCAGGTGGTGGGTGGCAGCGTAGTCGGGCCACTCACCGCTGCCGGCCCAGTGATGGTGATCGCTGCAACGTTTTCCAACGCGACATACGAAAGATTACCTTTGGAAGAGGAAGAAGAAGGCGGCGGAGTAGGAGCACAAGGGCACACATCAGCAGGCGGTGGTGCAGGCGACGGTTCGCCACAAGGCATCGGAGGCGGAGGCGGAGTCGGAGATCCGTCAGCTATGCCTCCGCTGTACAATTTACCGCCGAACTTGCTACCGAATGGCGGCGGCGGGCAGATGAATCAGGAGGCTTATTCGTGGGCTCACGGCGGCCGGCCGTCGTTTTAA 888 56.53 MMANRWWTSGQMGLPGVDHTSTSSSTMRKPDLGISMNDNGGPVNSGGVDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESIAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGVGAQGHTSAGGGAGDGSPQGIGGGGGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPSF 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30844980 30846048 + ClG42_02g0173500.10 Clacu02g1735 243803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1735 295 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Clacu02g1735 295 Gene3D - 99 225 - -
Clacu02g1735 295 MobiDBLite consensus disorder prediction 1 95 - -
Clacu02g1735 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Clacu02g1735 295 PIRSF ESCAROLA 12 295 IPR014476 GO:0003680(InterPro)
Clacu02g1735 295 MobiDBLite consensus disorder prediction 14 42 - -
Clacu02g1735 295 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Clacu02g1735 295 CDD DUF296 99 182 IPR005175 -
Clacu02g1735 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 211 IPR005175 -
Clacu02g1735 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 293 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu02g1735 295 MobiDBLite consensus disorder prediction 221 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0323 Clacu-Chr2:2942137 Clacu02g1735 Clacu-Chr2:30844980 1.40E-58 dispersed
Clacu02g1735 Clacu-Chr2:30844980 Clacu07g0338 Clacu-Chr7:3843198 8.00E-71 dispersed
Clacu02g1735 Clacu-Chr2:30844980 Clacu02g1737 Clacu-Chr2:30878767 2.90E-20 proximal
Clacu02g1735 Clacu-Chr2:30844980 Clacu05g0508 Clacu-Chr5:4214245 1.50E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1735 - - - 0.0