Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1747 ATGGCGGATAAAGGCAGAGACGGCGGCCACTCGAGTTTACTCGACGGGAAGTACGAATTAGGCCGTCTTCTAGGGCATGGAACCTTCGCTAAGGTTTATCATGCTCGGAATCTGCGAACGGGGAAGAGCGTCGCGATGAAAGTGGTTGGGAAGGAGAAGATCATTAAAGTCGGCATGACGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTATTTCGCGATGGAGTTCGTTAGAGGCGGTGAACTGTTCTCCAAAATCGCGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTAATCTCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGTGATCTGAAACCGGAAAACCTCCTACTCGACGAAGACGGTAACCTCAAGGTCACCGACTTCGGCCTCACCGCCTTCTCAGAGCACTTGAAGCAAGACGGATTGTTGCATACAACGTGTGGAACTCCGGCGTACGTCGCGCCGGAGGTCATCGGAAAGCAAGGATACGACGGCGCGAAGGCCGATCTGTGGTCTTGTGGAGTCATCCTTTACGTTCTTCTCGCCGGATACCTTCCATTCCAGGATGACAACATGGTGGCGATGTACCGGAAGATTTACAGAGGCGACTTCAAGTGTCCGCCGTGGTTCTCTCCCGAAGCCCGTCGGCTAATCACGAAGCTTCTAGATCCTAATCCAGTGACCAGAGTCGGTATCGCGAAGATTACATCGTCCTCGTGGTTCAAGAAATCGGTACCCAAGACTCTGAGTACGAAGGAGGAGCAAGAACAAACAGAGGAGAATTTCACGAAATCAAAGCCACCGGCGGAAACATTGAACGCGTTCCACATAATATCTCTATCGGAAGGTTTTGATCTGTCGCCGTTGTTCGAGGAGAAGAAAAGGGAGGAGAAAGAGGAGATGAGATTCGCGACTTCGTCGCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTGGCGAAGTCAGTGAAGTTCGATGTGAAGAAGAGCGAATCGTGGGTTCGATTGCAGGGGCAAGAGAAAGGGAGAAAGGGGAAACTGACGATCGCGGCGGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGATACTTTGGAGTATAATCAGTTCTGCAGGAAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACGGGAAACTCGACCCCAGCTTGA 1302 51.23 MADKGRDGGHSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMEFVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPVTRVGIAKITSSSWFKKSVPKTLSTKEEQEQTEENFTKSKPPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSPASSVISKLEEVAKSVKFDVKKSESWVRLQGQEKGRKGKLTIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTGNSTPA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30983019 30984320 + ClG42_02g0174700.10 Clacu02g1747 243815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1747 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524(InterPro)
Clacu02g1747 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1747 433 CDD CIPK_C 304 419 - -
Clacu02g1747 433 FunFam Non-specific serine/threonine protein kinase 10 97 - -
Clacu02g1747 433 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1747 433 Gene3D Kinase associated domain 1, KA1 298 424 - -
Clacu02g1747 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165(InterPro)
Clacu02g1747 433 Gene3D Transferase(Phosphotransferase) domain 1 98 297 - -
Clacu02g1747 433 FunFam Non-specific serine/threonine protein kinase 9 298 - -
Clacu02g1747 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1747 433 Pfam NAF domain 301 360 IPR004041 GO:0007165(InterPro)
Clacu02g1747 433 SUPERFAMILY Protein kinase-like (PK-like) 15 291 IPR011009 -
Clacu02g1747 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu02g1747 433 CDD STKc_SnRK3 17 271 - -
Clacu02g1747 433 Gene3D Phosphorylase Kinase; domain 1 13 97 - -
Clacu02g1747 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1747 433 FunFam Non-specific serine/threonine protein kinase 282 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2460 Clacu-Chr1:35068205 Clacu02g1747 Clacu-Chr2:30983019 3.20E-146 dispersed
Clacu02g1747 Clacu-Chr2:30983019 Clacu06g1315 Clacu-Chr6:24121893 6.20E-213 dispersed
Clacu02g1747 Clacu-Chr2:30983019 Clacu05g0482 Clacu-Chr5:4005197 3.60E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73349 PF00069 Pkinase 8.30E-73 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1747 - - - 0.0