Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1748 ATGGCTTCCTCACTCACTTCTTTGTTCATTTCTCGCCGGACTGATATGAGACTCACCAACTCCCTCCCGGATCTCCATAGCCACCGCCATAACCACCCTACGGAGACCGAAGCCTCTCAACGTCATCACCACCAACTTCAGACCTCCCTCTTCCATCCCTCTTCCTTCTCTTCCGACGATTTCCTCGACCAAATCCTCTCCGCCGCCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCCAAATCCTCACTCCGACCTCCCTCCCCAACCACTTCCGTCATCTAATCCCGACAATGTCGCGTTTCAGATCGGCGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTGCTCATGTCGAGAGGAATCACCGCTGCCGATGATTCCGGTCTCCTTCCAATGCCTGGGAACGATGTCGTTGAAATAGAAGGCTCTTCGTCTTTCAAATGCCCTAATCCGATTGATCACGGTTCCATCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCAGAATCAATCTCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGCAGTCCATCTCCGGCAGGCCCTAACTCCGGCGTTGGTGCTGCACCACCGGCTCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCATAGTATAGCAGAAAGATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCACTACAAGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCATCAATGCTGGATGAGATCATAGACTATGTAAAGTTTCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCCCTTCAACCTGATCTTTCCACTGAGGGTGGCACCGAGTGCAACCAGTCCAACGGAACCGGTGGGGCCGGCGGACAGGCTTCAGCCGAAGCTCCGTCGAGTAACGACGCGATGACGGTGACGGAACATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAACCACGACGTCGAAGGTCAGAGGAGATGCTCCCACCTCTCCTAGTCTGTCGGCGTTGACCGTTCAGTCAACTACCTTGGGTAACGGCACGGTGGACAGAACCGTTTCACGGCCGCCGTGA 1284 55.61 MASSLTSLFISRRTDMRLTNSLPDLHSHRHNHPTETEASQRHHHQLQTSLFHPSSFSSDDFLDQILSAAPPPWELPAGLPNPHSDLPPQPLPSSNPDNVAFQIGDTTPAAKMAMALLQQQLLMSRGITAADDSGLLPMPGNDVVEIEGSSSFKCPNPIDHGSIIPSLFNEFAGFLNASGSGHNQNQSQGNSNSQKQNFGAPVSVSSPSPAGPNSGVGAAPPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQASAEAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPTTTSKVRGDAPTSPSLSALTVQSTTLGNGTVDRTVSRPP 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31013676 31019351 - ClG42_02g0174800.10 Clacu02g1748 243816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1748 427 Pfam Helix-loop-helix DNA-binding domain 239 284 IPR011598 GO:0046983(InterPro)
Clacu02g1748 427 MobiDBLite consensus disorder prediction 178 242 - -
Clacu02g1748 427 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 378 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu02g1748 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983(InterPro)
Clacu02g1748 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 292 IPR036638 GO:0046983(InterPro)
Clacu02g1748 427 MobiDBLite consensus disorder prediction 387 427 - -
Clacu02g1748 427 MobiDBLite consensus disorder prediction 178 212 - -
Clacu02g1748 427 SMART finulus 240 289 IPR011598 GO:0046983(InterPro)
Clacu02g1748 427 MobiDBLite consensus disorder prediction 22 46 - -
Clacu02g1748 427 FunFam Transcription factor bHLH66 231 296 - -
Clacu02g1748 427 Gene3D - 229 291 IPR036638 GO:0046983(InterPro)
Clacu02g1748 427 MobiDBLite consensus disorder prediction 304 341 - -
Clacu02g1748 427 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1748 Clacu-Chr2:31013676 Clacu09g0742 Clacu-Chr9:6559834 6.00E-43 dispersed
Clacu06g1311 Clacu-Chr6:24045031 Clacu02g1748 Clacu-Chr2:31013676 2.20E-77 transposed
Clacu07g0017 Clacu-Chr7:558946 Clacu02g1748 Clacu-Chr2:31013676 1.90E-16 transposed
Clacu01g2316 Clacu-Chr1:34026739 Clacu02g1748 Clacu-Chr2:31013676 4.60E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47284 PF00010 HLH 1.60E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1748 - - - 0.0