Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g1748 | ATGGCTTCCTCACTCACTTCTTTGTTCATTTCTCGCCGGACTGATATGAGACTCACCAACTCCCTCCCGGATCTCCATAGCCACCGCCATAACCACCCTACGGAGACCGAAGCCTCTCAACGTCATCACCACCAACTTCAGACCTCCCTCTTCCATCCCTCTTCCTTCTCTTCCGACGATTTCCTCGACCAAATCCTCTCCGCCGCCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCCAAATCCTCACTCCGACCTCCCTCCCCAACCACTTCCGTCATCTAATCCCGACAATGTCGCGTTTCAGATCGGCGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTGCTCATGTCGAGAGGAATCACCGCTGCCGATGATTCCGGTCTCCTTCCAATGCCTGGGAACGATGTCGTTGAAATAGAAGGCTCTTCGTCTTTCAAATGCCCTAATCCGATTGATCACGGTTCCATCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCAGAATCAATCTCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGCAGTCCATCTCCGGCAGGCCCTAACTCCGGCGTTGGTGCTGCACCACCGGCTCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCATAGTATAGCAGAAAGATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCACTACAAGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCATCAATGCTGGATGAGATCATAGACTATGTAAAGTTTCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCCCTTCAACCTGATCTTTCCACTGAGGGTGGCACCGAGTGCAACCAGTCCAACGGAACCGGTGGGGCCGGCGGACAGGCTTCAGCCGAAGCTCCGTCGAGTAACGACGCGATGACGGTGACGGAACATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAACCACGACGTCGAAGGTCAGAGGAGATGCTCCCACCTCTCCTAGTCTGTCGGCGTTGACCGTTCAGTCAACTACCTTGGGTAACGGCACGGTGGACAGAACCGTTTCACGGCCGCCGTGA | 1284 | 55.61 | MASSLTSLFISRRTDMRLTNSLPDLHSHRHNHPTETEASQRHHHQLQTSLFHPSSFSSDDFLDQILSAAPPPWELPAGLPNPHSDLPPQPLPSSNPDNVAFQIGDTTPAAKMAMALLQQQLLMSRGITAADDSGLLPMPGNDVVEIEGSSSFKCPNPIDHGSIIPSLFNEFAGFLNASGSGHNQNQSQGNSNSQKQNFGAPVSVSSPSPAGPNSGVGAAPPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQASAEAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPTTTSKVRGDAPTSPSLSALTVQSTTLGNGTVDRTVSRPP | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 31013676 | 31019351 | - | ClG42_02g0174800.10 | Clacu02g1748 | 243816 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g1748 | 427 | Pfam | Helix-loop-helix DNA-binding domain | 239 | 284 | IPR011598 | GO:0046983(InterPro) | |
Clacu02g1748 | 427 | MobiDBLite | consensus disorder prediction | 178 | 242 | - | - | |
Clacu02g1748 | 427 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 36 | 378 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Clacu02g1748 | 427 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 234 | 283 | IPR011598 | GO:0046983(InterPro) | |
Clacu02g1748 | 427 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 232 | 292 | IPR036638 | GO:0046983(InterPro) | |
Clacu02g1748 | 427 | MobiDBLite | consensus disorder prediction | 387 | 427 | - | - | |
Clacu02g1748 | 427 | MobiDBLite | consensus disorder prediction | 178 | 212 | - | - | |
Clacu02g1748 | 427 | SMART | finulus | 240 | 289 | IPR011598 | GO:0046983(InterPro) | |
Clacu02g1748 | 427 | MobiDBLite | consensus disorder prediction | 22 | 46 | - | - | |
Clacu02g1748 | 427 | FunFam | Transcription factor bHLH66 | 231 | 296 | - | - | |
Clacu02g1748 | 427 | Gene3D | - | 229 | 291 | IPR036638 | GO:0046983(InterPro) | |
Clacu02g1748 | 427 | MobiDBLite | consensus disorder prediction | 304 | 341 | - | - | |
Clacu02g1748 | 427 | MobiDBLite | consensus disorder prediction | 22 | 42 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1748 | Clacu-Chr2:31013676 | Clacu09g0742 | Clacu-Chr9:6559834 | 6.00E-43 | dispersed | |
Clacu06g1311 | Clacu-Chr6:24045031 | Clacu02g1748 | Clacu-Chr2:31013676 | 2.20E-77 | transposed | |
Clacu07g0017 | Clacu-Chr7:558946 | Clacu02g1748 | Clacu-Chr2:31013676 | 1.90E-16 | transposed | |
Clacu01g2316 | Clacu-Chr1:34026739 | Clacu02g1748 | Clacu-Chr2:31013676 | 4.60E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47284 | PF00010 | HLH | 1.60E-09 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g1748 | - | - | - | 0.0 |