Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1766 ATGAGGTGGAATTCTTTCTACACCAAAGCCTCTAAGGCTTTTCATGATCATCCTTCCATCTCCAAGCTTCTCATTGTTTTCACTATCAGTGGAGGTGGACTGGTAGCAGCTACTAATGGCAGATCTCGTTATCATTCTGCATATGCTGATGCAGGCCAACAAGATGGTGACTGCAAGAAGAAGAAAGTGGTGGTGCTTGGAACAGGATGGGCTGGGACCAGTTTTTTGAAGAATCTCAAGAGCTCGTCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTACCTAGTGTCACCTGTGGGACGGTTGAAGCACGCAGCATTGTCGAACCGATTCGTAGTATTACAAGGAAGAAAGGTCTGAATATTGAATTTAGGGAAGCTGAGTGCTATAAGATTGATGCAGAGAAGAAAAAGGTGTTCTGTCGATCAAGTCAAGACACAAATTTGGGTGGCAGAGAAGAATTTTCTGTTGACTATGACTATCTGATTATAGCTATGGGAGCTAAATCCAACACTTTCAACACACCTGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACCGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGCCCAACAGGGGTGGAATTTGCTGCAGAGCTTCATGACTTTGCAGTAGAGGATTTAGCAGGGCTGTATCCTTCATTGAAAGACTATGTGAAAATAACCCTGTTAGAGGCAGGAGATAATATTTTGAACATGTTTGACAAGAGGATTACCGCCTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTGAAGTAAAAACTGGTTCCATGGTTGTAAAAGTAACTGATAAGGAAATCTCCACAAAAGAAAGAGCAACCGGTGAATTTGTGTCTGTTCCTTATGGAATGGTTGTCTGGTCTACCGGCATCGGCCCTCGTCCTCAAGTTGTTGATTTCATGAAGCAGATTGGTCAGACTAACAGAAGAGCTTTGGCAACTGATGAGTGGCTAAGGGTTGAAGGATGTGATGGTGTCTATGCTCTTGGTGATTGTGCCACTGTAAATCAAAGAAGAGTCATGGAAGATATTGCAGTAATATTCTGCAAGGCAGACAAGGACAAGTCAGGAACTTTAGCCCTGCAAGAGTTTCAAGAAGTGGTAGATGATATTTGCGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCTGCTTTGTTGAAGAAGACGCAATCCGACGCACAGAAACAGTCGACCGAACTGGATATTGAAAGCTTTAAGTCTTTACTTTCTGAAGTCGATTCTCAGATGAAAAATCTCCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTCAACCGGATGGAGCAGTGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTCGAGGGACGGGACGCCACAGGTTTCACCCTTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCAGCTCAACTTCCTGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCTGTGTATGCCAGCAAGCTAGTAAGTTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATATTTGGCAGGGATTCAAGCAGAATCTGA 1758 43.8 MRWNSFYTKASKAFHDHPSISKLLIVFTISGGGLVAATNGRSRYHSAYADAGQQDGDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRSITRKKGLNIEFREAECYKIDAEKKKVFCRSSQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAGLYPSLKDYVKITLLEAGDNILNMFDKRITAFAEEKFQRDGIEVKTGSMVVKVTDKEISTKERATGEFVSVPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDGVYALGDCATVNQRRVMEDIAVIFCKADKDKSGTLALQEFQEVVDDICERYPQVEIYLKKKQMKNFAALLKKTQSDAQKQSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMEQCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31210503 31213488 - ClG42_02g0176600.10 Clacu02g1766 243834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1766 585 SUPERFAMILY EF-hand 341 462 IPR011992 -
Clacu02g1766 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 365 383 - -
Clacu02g1766 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 223 247 - -
Clacu02g1766 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 62 84 - -
Clacu02g1766 585 PANTHER NADH DEHYDROGENASE 47 585 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Clacu02g1766 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 429 584 - -
Clacu02g1766 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Clacu02g1766 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 355 377 - -
Clacu02g1766 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Clacu02g1766 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Clacu02g1766 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 382 IPR023753 GO:0016491(InterPro)
Clacu02g1766 585 Pfam NDH2 C-terminal domain 520 581 IPR054585 -
Clacu02g1766 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509(InterPro)
Clacu02g1766 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 412 - -
Clacu02g1766 585 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
Clacu02g1766 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Clacu02g1766 585 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Clacu02g1766 585 Gene3D - 432 584 - -
Clacu02g1766 585 Gene3D - 53 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1766 Clacu-Chr2:31210503 Clacu03g0554 Clacu-Chr3:5724574 3.40E-262 dispersed
Clacu05g2383 Clacu-Chr5:32173014 Clacu02g1766 Clacu-Chr2:31210503 9.20E-08 transposed
Clacu01g2344 Clacu-Chr1:34203347 Clacu02g1766 Clacu-Chr2:31210503 1.70E-71 wgd
Clacu02g0138 Clacu-Chr2:1415916 Clacu02g1766 Clacu-Chr2:31210503 1.30E-213 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1766 K03885 - csv:101209855 1124.0