Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1780 TGTCTTCTTAATTTTGTGGAGCTGAAGAGTAAATGGGGAGCTGTTTGTCTACTGGCAATCAGAATAGTTGCAGAAGTGGAAGGAATGGAGAGAGAGTTTCTGGATCCTGTTTGGGAATTGGAACTCGTTTATAATGGGAAGACTCGAAATTCTTGTATTTTCACTCAGCAGGGTCGAAAGGGTATAAACCAAGACGCTATGGTTGTATGGGAAGACTTCATATCAGATGGTGCAATTTTCTGTGGGGTATTTGATGGCCACGGTCCTCATGGTCATGTCGTTGCACGAAAAGTTAGAGATGTTCTGCCGAGAAAGCTAGTGTCATTCTGGCAGTCATCTCAGTTGAAGCATAATAGATCAGATAGAACTTCTTGTCTCCCGTGGAGTCAGAAGGATTCAGCAGATGGTGAAGGACAGAACATAGATGCCTCAGAGGAGGATAAATCAAGTTCTTTATGGAGAACAGCTTTCCTCAAATCATATAAAGCCATGGATAAGGAGCTCAAGTCTCATCCCAAATTGGACTGTTTCTGTAGTGGCAGTACCGCAGTTACCCTAGTGAAGCAGGGCTCAGATCTATTTGTGGGAAGTATCGGGGATTCTCGAGCGATTCTTGGATCTAAAGACAGCAGTGATTCCCTTGTAGCAACCCAGTTGACAGTAGATCTAAAGCCTGATTTACCCAGAGAAGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTATTTGCATTGCACGACGAGCCAGAAGTGCCAAGAGTGTGGCTGCCATTTGACAATGCACCTGGATTAGCAATGGCTCGAGCATTTGGCGACTTCTGTTTGAAGGACTATGGAGTTATCTCTATCCCTGAGTTCTCACACCGTGTGCTTACAAATAATGATTTGTTTGTTGTCCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAATGAAGAGGTGGTCGAGATAGTCTATTCTGCCTCAACTCGGTCATCGGCAGCCCGAATGGTGGTAGACTCAGCTGCTCGAGAGTGGAAACTCAAGTATCCTACTTCGAAAATGGATGACTGTGCTGTCGTCTGCCTATTCTTGGACGGGAAAGTGGATTCAGAATCAGAAAATGAAGAACAAGCTTCTTCTGCAACTCTTCAAACCAACCAAATGGGTCACACCGCAGAATCAGATGATGAGCAGCAGAGGTCTGAGCCAAGTTTGCAAAGGAATTATACGGTCCGATCGTCAGAAGAAAAAGACCAAATTGGAGGATTATCTTCTTCACATAATGAAGAGAATGGAGAACCAATATCTGCTGAAGATGATAATTGGTTGGGACTGGAGGGTGTAACAAGAGTAAACTCTTTGGTTCAACTCCCTAGATTTTCTTGA 1365 44.18 CLLNFVELKSKWGAVCLLAIRIVAEVEGMEREFLDPVWELELVYNGKTRNSCIFTQQGRKGINQDAMVVWEDFISDGAIFCGVFDGHGPHGHVVARKVRDVLPRKLVSFWQSSQLKHNRSDRTSCLPWSQKDSADGEGQNIDASEEDKSSSLWRTAFLKSYKAMDKELKSHPKLDCFCSGSTAVTLVKQGSDLFVGSIGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALHDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRVLTNNDLFVVLASDGVWDVLSNEEVVEIVYSASTRSSAARMVVDSAAREWKLKYPTSKMDDCAVVCLFLDGKVDSESENEEQASSATLQTNQMGHTAESDDEQQRSEPSLQRNYTVRSSEEKDQIGGLSSSHNEENGEPISAEDDNWLGLEGVTRVNSLVQLPRFS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31315503 31317437 - ClG42_02g0178000.10 Clacu02g1780 243848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1780 454 FunFam probable protein phosphatase 2C 52 41 360 - -
Clacu02g1780 454 MobiDBLite consensus disorder prediction 364 436 - -
Clacu02g1780 454 CDD PP2Cc 56 357 IPR001932 -
Clacu02g1780 454 PANTHER PROTEIN PHOSPHATASE 52 356 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu02g1780 454 MobiDBLite consensus disorder prediction 396 424 - -
Clacu02g1780 454 MobiDBLite consensus disorder prediction 121 147 - -
Clacu02g1780 454 ProSiteProfiles PPM-type phosphatase domain profile. 50 357 IPR001932 -
Clacu02g1780 454 MobiDBLite consensus disorder prediction 121 137 - -
Clacu02g1780 454 MobiDBLite consensus disorder prediction 368 385 - -
Clacu02g1780 454 Gene3D - 42 359 IPR036457 -
Clacu02g1780 454 Pfam Protein phosphatase 2C 142 334 IPR001932 -
Clacu02g1780 454 SMART PP2C_4 39 355 IPR001932 -
Clacu02g1780 454 SUPERFAMILY PP2C-like 48 359 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1780 Clacu-Chr2:31315503 Clacu10g0354 Clacu-Chr10:4496676 1.40E-111 dispersed
Clacu05g1933 Clacu-Chr5:28556357 Clacu02g1780 Clacu-Chr2:31315503 6.90E-76 transposed
Clacu02g0125 Clacu-Chr2:1330347 Clacu02g1780 Clacu-Chr2:31315503 1.30E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1780 - - - 0.0