Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1790 ATGCAGCTCCTCCTCCGCCGCCGCAGTTTTCGGCTCACTAGAGCTTTGTTCTGTGCCGCGGCTGTGCTTGAGTGGTTCACGGCGGCGGCTCAGCTCCAACACCGTGTACCGAATCTACATTGGCTTCCAGCCACCGCCACGTGGTACGGGAGTCCCGAGGGAGACGGTAGCGACGGTGGAGCATGTGGGTATGGTAATTTAGTGGATGTCAAGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAGTTTTGTTCAGAAATGGTGAAGGGTGTGGAGCCTGTTACAAAGTGAAGTGTTTAGACCAGAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGATGAGTGCCCCGGTGGGTATTGTTCCAATGGCAATACTCACTTCGATCTCAGCGGCGCCGCTTTTGGCCGCATGGCCATCGCCGGCGAAGGTGGGCAGCTCAGAAACCGAGGCGAAATCCCAGTAATTTACCGACGAACTCCGTGTAAGTACCCAGGCAAGAACATTGCCTTCCATGTCAATGAAGGCTCGACAGATTACTGGCTCTCACTCTTAGTTGAATTCGAGGATGGAGATGGAGACATCGGTGCAATGCAAATAAAAGAAACAAATTCAGGGGAGTGGCTGGATATGAACCATCTATGGGGGGCAAATTGGTGCATAATTGGTGGGCCATTAAAGGGCCCATTCTCAGTGAGATTAACAACTTTATCTACAGGAAGAACCCTCTCAGCAAGGGATATAATCCCAAGGAATTGGTCTCCCAAAGCCACTTACACTTCCCGCCTTAATTTCTTCTCTTGA 810 51.36 MQLLLRRRSFRLTRALFCAAAVLEWFTAAAQLQHRVPNLHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFRNGEGCGACYKVKCLDQNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKETNSGEWLDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRTLSARDIIPRNWSPKATYTSRLNFFS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31439954 31441441 - ClG42_02g0179000.10 Clacu02g1790 243858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1790 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Clacu02g1790 269 Pfam Lytic transglycolase 79 157 IPR009009 -
Clacu02g1790 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Clacu02g1790 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Clacu02g1790 269 PANTHER EXPANSIN-B3 25 267 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Clacu02g1790 269 CDD DPBB_EXPB_N 41 164 - -
Clacu02g1790 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576(InterPro)
Clacu02g1790 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Clacu02g1790 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576(InterPro)
Clacu02g1790 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576(InterPro)
Clacu02g1790 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Clacu02g1790 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576(InterPro)
Clacu02g1790 269 SMART dpbb_1 77 159 IPR007112 -
Clacu02g1790 269 FunFam Beta-expansin 3 166 268 - -
Clacu02g1790 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu02g1790 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu02g1790 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu02g1790 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu02g1790 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu02g1790 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Clacu02g1790 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Clacu02g1790 269 Gene3D - 27 165 IPR036908 -
Clacu02g1790 269 SUPERFAMILY Barwin-like endoglucanases 40 168 IPR036908 -
Clacu02g1790 269 Gene3D - 166 268 IPR036749 -
Clacu02g1790 269 FunFam Expansin B3 27 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1790 Clacu-Chr2:31439954 Clacu05g0027 Clacu-Chr5:555931 8.70E-64 dispersed
Clacu02g1790 Clacu-Chr2:31439954 Clacu07g0290 Clacu-Chr7:3228956 7.70E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1790 K20628 - csv:101202998 510.76