Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1803 ATGGGCTGCATCTGTTCTAAGGTTTTAGCTGACGAGTGTAGTGACAATGAACATGATACCTCCAAAAGAGCTCATTCCCCAATTAAACGCCTCTCTGAATTAAAAAAATCAAGATCTGGCTCTCCCACATCTGAGAAAATTTGGGAGAAAGATAGGCTGAATTGTAGTGATGTTACGGTTATGTTGTTCGATACAACGGCGAATGGTTCTCTACGCTCACACGGCAAGCTTTCTAATGAGAAGAAGAGCACAGACATCCCTGATGTCACCATTATCAACCATCCATTTATGGGAAAGATTCCGAAGGCTACTGAGGCCGAGCAAGTCGCTGCCGGGTGGCCGAGTTGGCTGGCTGTGGTGGCTGGTGAAGCTATCAAAGGCTGGTTGCCAAAACGTGCAAATAACTTCATCAAGTTAGAGAAAATTGGCCAAGGAACTTATAGCAGTGTGTATAAAGCTCGGGATATCATTCAAGATAAAGTTGTGGCCTTGAAAAGGATCAGATTTGACAATCAAGATGCTGAGAGTATCAAGTTTATGGCAAGGGAAATCCTTGTTTTGAGAAGGCTTGATCATCCAAATATAGTTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTACTATGTACCTTGTTTTTGAATATATGGAACATGATCTTACCGGACTCGCATCACGGCCTGGCGCGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGATCATTGTCACAGTAATGGGGTTCTTCATAGAGACATAAAGGGCTCAAATCTTCTTATTGACAACAATGGCATTTTGAAGATGGCAGATTTTGGGTTGGCTGTTTTCTTTGATTCTCATTCAACAGTTCCAATGACGAGCCGTGTAATAACTCTCTGGTATCGACCACCAGAACTTTTACTTGGAGCGTCTAAATATGGAGTTGAAGTTGATTTATGGAGTGCTGGCTGCATTCTAGGAGAGTTATATACTGGCAAGCCCATCTTACCAGGGAAAACAGAGGTTGAACAACTACATAAAATATTTAAGCTATGTGGTTCCCCTTCCAAGGACTATTGGAAAAAATTGCATTTGAAGCAATCAACAAGCATGAAACCTCCACAGTCATATGAAAGATGTCTTCGAGAAAGATATAACGATATTCCTCGTGCTGCTGTTGACCTCATGGACACTTTGTTATCTATAGATCCTACAGGGCGAGGAACTGCTGCTTCCGCACTCGACAGTGAGTTCTTTACAACAAGGCCCTTACCAAGCGATCCTTCAAATTTGCCAAAATACCCTCCAAGCAAAGAGATCGATTCAAAACTGCGTGAAGAGGAAGCAAGAAGGCAACAAGGAGTAGGTGGTGGGAGAAGCCAAATAGTCTACCAAGAAGCAAAAGGACTGAAGCAATCTAGAGTAGTTCCTGCTGCAAAGGCTAATGCTGAGTTGGTTATTTCATTACTGAGAAAACAAAGTCGTTCGAGCGCGAAGTACCGGAATGAAACGTATTCTTATGGTTTGGTGTCGAAAAGAACCTCAAATTCAGGACCTATAACTCAGGGACCGAGATTTACAAACAACAAAAAGGAACCAAAACATGTTTCTATGGTTTCCAGTGAGTGTTTAATATCATCTGGTCCTATTGAATTTGTTTCTTACAAATATGTCAGAGAAAGAAATGAAGTTTCAAAGCCAGAATCAATGAGCCAAGACAAAAATCTTCCTCTTCTATCCAGTTCTGCTGAAGAGTCATCCATCAAAAAGCTAAACGAAGACAAAGTTGGTATGAAGAAAGTTACAAATTCTTGTCAGTTGGAAGATTCAAAGGCCTCAGCTCTAATAGTTGGCTAA 1860 41.4 MGCICSKVLADECSDNEHDTSKRAHSPIKRLSELKKSRSGSPTSEKIWEKDRLNCSDVTVMLFDTTANGSLRSHGKLSNEKKSTDIPDVTIINHPFMGKIPKATEAEQVAAGWPSWLAVVAGEAIKGWLPKRANNFIKLEKIGQGTYSSVYKARDIIQDKVVALKRIRFDNQDAESIKFMAREILVLRRLDHPNIVKLEGLITSQTSCTMYLVFEYMEHDLTGLASRPGASFTEPQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGILKMADFGLAVFFDSHSTVPMTSRVITLWYRPPELLLGASKYGVEVDLWSAGCILGELYTGKPILPGKTEVEQLHKIFKLCGSPSKDYWKKLHLKQSTSMKPPQSYERCLRERYNDIPRAAVDLMDTLLSIDPTGRGTAASALDSEFFTTRPLPSDPSNLPKYPPSKEIDSKLREEEARRQQGVGGGRSQIVYQEAKGLKQSRVVPAAKANAELVISLLRKQSRSSAKYRNETYSYGLVSKRTSNSGPITQGPRFTNNKKEPKHVSMVSSECLISSGPIEFVSYKYVRERNEVSKPESMSQDKNLPLLSSSAEESSIKKLNEDKVGMKKVTNSCQLEDSKASALIVG 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31554403 31556896 + ClG42_02g0180300.10 Clacu02g1803 243871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1803 619 SUPERFAMILY Protein kinase-like (PK-like) 131 427 IPR011009 -
Clacu02g1803 619 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Clacu02g1803 619 PANTHER CELL DIVISION PROTEIN KINASE 136 420 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Clacu02g1803 619 Gene3D Transferase(Phosphotransferase) domain 1 219 458 - -
Clacu02g1803 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1803 619 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1803 619 MobiDBLite consensus disorder prediction 516 535 - -
Clacu02g1803 619 FunFam probable serine/threonine-protein kinase At1g54610 123 218 - -
Clacu02g1803 619 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524(InterPro)
Clacu02g1803 619 FunFam probable serine/threonine-protein kinase At1g54610 219 460 - -
Clacu02g1803 619 MobiDBLite consensus disorder prediction 439 454 - -
Clacu02g1803 619 MobiDBLite consensus disorder prediction 570 585 - -
Clacu02g1803 619 Pfam Protein kinase domain 138 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1803 619 MobiDBLite consensus disorder prediction 420 458 - -
Clacu02g1803 619 CDD STKc_CDK9_like 136 420 - -
Clacu02g1803 619 SMART serkin_6 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1803 619 MobiDBLite consensus disorder prediction 565 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1803 Clacu-Chr2:31554403 Clacu05g1093 Clacu-Chr5:9786229 2.80E-174 dispersed
Clacu02g1803 Clacu-Chr2:31554403 Clacu02g1804 Clacu-Chr2:31562719 9.60E-167 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73350 PF00069 Pkinase 5.20E-68 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1803 - - - 0.0