Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1823 ATGCTCCGATCCGCTCCTGGAATGGAGGATCAGCGAGATGATGTTGCACCATCAGAGCAAGGGCCTTCCAATGCTTCCTGGTGGTCTTCTGATTTTGAGGAGAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATATTGTAAGTGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTATTGTCGCCTCAGAGAGCTTCTCAAATTCTCTGGGGTACTGGAATGCTTTGTGAACCAATTCCAGATGGGTTCTATTCTGTTATTCCGGATAAAAGGCTGAAAGAGCGGTTTCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAGAAACGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAACTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTGCTCTAGAAGAAAACTCCCACTTGTTCGAGGATAGAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCTTGCCGTCCAAGAGCTATCTTATTTAAGGCTCTGGCGGACACTGTAGGGCTTGAAAGCCGTCTCATGGTGGGCTTGCCTAATGAGGGGGCTATTGGGTGTGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGATTCCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTTATGACCCATATTTCCGCTGCTGGTGAAAGCGATTCTGCAGAAAACGATTCCTGTGATTCACCACTAGAACCTAATAGTCCTCTTTATGGTTTCTCAGAAAGAGTTGATCCTGACAGTGCTGAGAAAGATGAGAGCCTTCAATTCCACAGAAAATTTGAAGCAGCTTCAAATGCATATGGTCATTCATTGCGCAACATGATGTTGCGATCAAGTACAACACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGTGGCCGGTCGATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGCGCTTCAACTTCAACTTCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAGTGAAACATTGAAGCAAAATCGTCTTTTGAGAGGGCAAGAAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAGTAGTTCAGATGTTCAGAGAAATGATCAAGTGGGCTCTCAAAGAGCAATATCATTACCATCATCGCCACACGTGTATAGGGGTCAAACCTCTGATAGAATTGGGCATTCAGCATATCCGAATCATGAATTAGCCTCAAAATGGACTAAAGTTCTTGAATCTTTCTCCTTGAATGACAAACCACTATTACCTTACCCAGAGTGGAACATCGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGAACAGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAACGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATACTATTTCTGGGGGCATGCACAAAGCCGCCACGCTTATCAATGATCACTGAATACATGGAGATGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAGAAAAAACTTAGCTGGCGGAGGAGACTGAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAGCACTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAATGAGCCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACGCTAAATAGACCATGGGAGGGTGTTCCACCGGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGATCCCGCCTCGAGATTCCCGAAGGCCCGCTTGGCAGACTTATATCAGATTGTTGGGCGGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTGGACTGCGAAAAACATGGTAGAGGTGCTACTTTTGATGTTCTCGGCTCCAATTGTGAACTTTTGTTGATTTTTCCAACCATTGTTATACAATTTAAAGCGGAAAAAAAAAAAAAAAAAGAACCTGTTGGTTTTTATCTTCCAATGGTTTCTTTCTGTGCTATAAAAAGCAAGAGACCATCTCAGTTTCTGAGTCCAAAACTTGAATGCATTTCAATTGCTTTACGTGTAAGAACTGAGAAGAATCTTGGTTCGTTTACTTGCCCTGCATTCTCGTGTATGCTTTACTTCCCAGTCAAGCAAGATCGTTGGAAGGGGTCAGTAAATCTGATCTATCACAGCTTATTTGATGCTTGTTACGACCTTTCTTGGAAATCCCTTGTAAAATTCAGAAGGATATCAGGTTTAGAAGTATAA 2808 42.98 MLRSAPGMEDQRDDVAPSEQGPSNASWWSSDFEEKFGSVSLGPREDIVSEKEEIINSDQDVLLSPQRASQILWGTGMLCEPIPDGFYSVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAALEENSHLFEDRGIQLLGQIKFGSCRPRAILFKALADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSAEKDESLQFHRKFEAASNAYGHSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSEARRLRRRSISITPEIGDDIVRAVRAMSETLKQNRLLRGQEDDRSFSHPSNERNSSSDVQRNDQVGSQRAISLPSSPHVYRGQTSDRIGHSAYPNHELASKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEKHGRGATFDVLGSNCELLLIFPTIVIQFKAEKKKKKEPVGFYLPMVSFCAIKSKRPSQFLSPKLECISIALRVRTEKNLGSFTCPAFSCMLYFPVKQDRWKGSVNLIYHSLFDACYDLSWKSLVKFRRISGLEV 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31722375 31732693 - ClG42_02g0182300.10 Clacu02g1823 243891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1823 935 MobiDBLite consensus disorder prediction 1 29 - -
Clacu02g1823 935 MobiDBLite consensus disorder prediction 280 313 - -
Clacu02g1823 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1823 935 SMART serkin_6 549 798 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1823 935 MobiDBLite consensus disorder prediction 455 469 - -
Clacu02g1823 935 MobiDBLite consensus disorder prediction 470 502 - -
Clacu02g1823 935 Gene3D Phosphorylase Kinase; domain 1 542 627 - -
Clacu02g1823 935 PANTHER SERINE-THREONINE PROTEIN KINASE 328 798 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu02g1823 935 MobiDBLite consensus disorder prediction 1 16 - -
Clacu02g1823 935 ProSitePatterns Protein kinases ATP-binding region signature. 555 576 IPR017441 GO:0005524(InterPro)
Clacu02g1823 935 FunFam Serine/threonine-protein kinase isoform 1 540 627 - -
Clacu02g1823 935 MobiDBLite consensus disorder prediction 369 426 - -
Clacu02g1823 935 Pfam Ethylene-responsive protein kinase Le-CTR1 66 261 - -
Clacu02g1823 935 Pfam Protein tyrosine and serine/threonine kinase 551 797 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1823 935 MobiDBLite consensus disorder prediction 391 408 - -
Clacu02g1823 935 MobiDBLite consensus disorder prediction 453 507 - -
Clacu02g1823 935 CDD STKc_MAP3K-like 555 797 - -
Clacu02g1823 935 ProSiteProfiles Protein kinase domain profile. 549 798 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1823 935 SUPERFAMILY Protein kinase-like (PK-like) 525 797 IPR011009 -
Clacu02g1823 935 Gene3D Transferase(Phosphotransferase) domain 1 628 813 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1823 Clacu-Chr2:31722375 Clacu05g1942 Clacu-Chr5:28609555 5.50E-73 dispersed
Clacu02g1823 Clacu-Chr2:31722375 Clacu04g1031 Clacu-Chr4:24581566 6.30E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73352 PF07714 PK_Tyr_Ser-Thr 5.90E-59 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1823 - - - 0.0