Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1854 ATGCGAAAATTTAATTCCGTGTGTCAGAGCAAGAAAGAGAAGAGCTGGAAGGGCAGAAGACATCGAATATCCGTCTTGATCCTGAAGCCTTTCTCCTTCCTTCTTTATCTCTTCCCTATAAAGCCGCAGTTTCTGCAGTCACACTTCTTTCCAAGATCATCATCATCATCATCATCATCATCTGCTTCTTCATCGTCGTCGTCATCTTCATCTTCTTCTTCCTCTTCTTCTTCCTCTTCTTCTTCAGCTGTAATGAAATTCGAAGAGCAGAACCTGAAGCATCAATCTGAACAGATGTGCAGGACTATTGAGGTGGATACAATTGATCACCATCGCAGTATTTCGTCGCTACTCGTAATGGAAGCTTCCGAAGACTGCGACAGGGACGGTGACGGCCTCTATATTCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTCCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAACGGGATTAGATTGTTTCAATTTGGAATCGAAAGCAATAAGGAGCCTTTCGTGAACATCCCAGATGATATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGAAATCATCCGGTTCTCATACATTGCAAAAGAGGAAAGCATCGGACAGGTTGTCTTGTGGGATGCCTGAGAAAAGTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAAAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTCATGGAGTTGTTTGATATCTCTGGCTTGAAGCATCTTCCCATGTCATTCTCATGCTCAAAGAGCTGTATGCTCATCTCTATCTCTGGTTCCTTCCAAGACGAAAGCTCGAAGCTCAGTGGAAAAAGCTTATGCGGTGTAAACTTCGCTGGAGTTCTTCCTCTGTGA 990 44.95 MRKFNSVCQSKKEKSWKGRRHRISVLILKPFSFLLYLFPIKPQFLQSHFFPRSSSSSSSSSASSSSSSSSSSSSSSSSSSSSAVMKFEEQNLKHQSEQMCRTIEVDTIDHHRSISSLLVMEASEDCDRDGDGLYIPPLNFSMVDNGIFRSGFPDSPNFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLFQFGIESNKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKVQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISGLKHLPMSFSCSKSCMLISISGSFQDESSKLSGKSLCGVNFAGVLPL 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32012657 32016280 - ClG42_02g0185400.10 Clacu02g1854 243922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1854 329 Gene3D Protein tyrosine phosphatase superfamily 134 283 IPR029021 -
Clacu02g1854 329 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 202 242 IPR000387 GO:0016311(InterPro)
Clacu02g1854 329 MobiDBLite consensus disorder prediction 56 80 - -
Clacu02g1854 329 ProSiteProfiles Dual specificity protein phosphatase domain profile. 139 293 IPR020422 GO:0006470(InterPro)
Clacu02g1854 329 FunFam probable tyrosine-protein phosphatase At1g05000 133 283 - -
Clacu02g1854 329 CDD PFA-DSP_Siw14 133 280 - -
Clacu02g1854 329 PRINTS Plant and fungal dual specificity phosphatase signature 134 151 IPR020428 GO:0016791(InterPro)
Clacu02g1854 329 PRINTS Plant and fungal dual specificity phosphatase signature 207 221 IPR020428 GO:0016791(InterPro)
Clacu02g1854 329 PRINTS Plant and fungal dual specificity phosphatase signature 171 184 IPR020428 GO:0016791(InterPro)
Clacu02g1854 329 PRINTS Plant and fungal dual specificity phosphatase signature 190 204 IPR020428 GO:0016791(InterPro)
Clacu02g1854 329 Pfam Tyrosine phosphatase family 134 285 IPR004861 -
Clacu02g1854 329 PANTHER TYROSINE-PROTEIN PHOSPHATASE 80 290 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Clacu02g1854 329 ProSitePatterns Tyrosine specific protein phosphatases active site. 229 239 IPR016130 GO:0016311(InterPro)
Clacu02g1854 329 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 135 281 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1046 Clacu-Chr3:18753412 Clacu02g1854 Clacu-Chr2:32012657 2.50E-63 transposed
Clacu02g1854 Clacu-Chr2:32012657 Clacu09g1115 Clacu-Chr9:10695403 2.30E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1854 K18045 - csv:101222170 416.387