Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1856 ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATCTCAGAGGCGCTCTGGCGGTTGGAAATCAGTGATAATCAAGATGGAGGCGATGCAGCCGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCAGATTGCTTATATTACATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTTTACGTTGCTCAGGGTGCTCTGTATAATGGGGAACTTCCAGAAAGAATTGGACAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGCCTTCCCATGAGACAGGAAGAAAAGTCATGCCCTTATTATTTGCGCACTGGATCGTGTAAATTTGGAGTTTCGTGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATGCTACCTCAAGCTAGGCCCGGTGCTTTGGGTTCTGGAGGCACTCCGTTCATGCCTTCATCTGGTGTGCCATATACTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGTCCATGCGTACAAGGCCAACAATCTTATGTGCCTGTCTTGGTTTCTCCATCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTACGTGGGCAATGTCAGTCCCATTCTTCCCAATCTTGGTTACAATTCTGTCAATTTGGAAGAGTCGTATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAACGCTACCCGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAACGGCACCTGCAAGTATGGATCTGATTGCAAATTCCATCATCCAAAACAAAGAATTGCACAATCAGCAACTAATGCGCTTGGACTTCCTTCAAGACCCGGACAAGCTATATGTTCATACTACAATATGTATGGGATCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAATTATGGCTTCACTCTGCCTGTGCTTGATTCATCTTTTATAAAGTATCCCAGCAACAACTTCACAATGTCCTCACATGAGACTTTGCCCCAAACATTATCTAAATCTTCTGAATGGGTTCAGAAAGCCGATCCATCGAACAACAAATGCCGAACTACCGATTCGAAAGTCGTAGTAGAGAGCACAGCTGAAGAGGCGACCTCTGTTTCATGCTCATTACCAGGTGGTTCAGAAACTTTGCAAGATCAATCTGGTTGA 1311 44.62 MPDNLQVQRNAVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNMLPQARPGALGSGGTPFMPSSGVPYTGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVGNVSPILPNLGYNSVNLEESYSNGQLALSTSTPTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAICSYYNMYGICKYGPSCKFDHPSATYPYNYGFTLPVLDSSFIKYPSNNFTMSSHETLPQTLSKSSEWVQKADPSNNKCRTTDSKVVVESTAEEATSVSCSLPGGSETLQDQSG 436
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 32059801 32063368 + ClG42_02g0185600.10 Clacu02g1856 243924
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1856 436 Gene3D - 43 121 - -
Clacu02g1856 436 Gene3D - 274 353 - -
Clacu02g1856 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 72 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872(InterPro)
Clacu02g1856 436 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872(InterPro)
Clacu02g1856 436 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872(InterPro)
Clacu02g1856 436 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 Gene3D - 122 170 - -
Clacu02g1856 436 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 SUPERFAMILY CCCH zinc finger 322 347 IPR036855 GO:0046872(InterPro)
Clacu02g1856 436 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 PANTHER PROTEIN PHOSPHATASE RELATED 16 347 IPR050974 GO:0003729(PANTHER)
Clacu02g1856 436 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 SMART c3hfinal6 88 115 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 SMART c3hfinal6 276 303 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 SMART c3hfinal6 135 160 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 SMART c3hfinal6 319 346 IPR000571 GO:0046872(InterPro)
Clacu02g1856 436 SUPERFAMILY CCCH zinc finger 280 304 IPR036855 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1856 Clacu-Chr2:32059801 Clacu03g0340 Clacu-Chr3:3901126 5.10E-21 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47295 PF00642 zf-CCCH 8.10E-09 CL0537 Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1856 - - - 0.0