Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g1856 | ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATCTCAGAGGCGCTCTGGCGGTTGGAAATCAGTGATAATCAAGATGGAGGCGATGCAGCCGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCAGATTGCTTATATTACATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTTTACGTTGCTCAGGGTGCTCTGTATAATGGGGAACTTCCAGAAAGAATTGGACAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGCCTTCCCATGAGACAGGAAGAAAAGTCATGCCCTTATTATTTGCGCACTGGATCGTGTAAATTTGGAGTTTCGTGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATGCTACCTCAAGCTAGGCCCGGTGCTTTGGGTTCTGGAGGCACTCCGTTCATGCCTTCATCTGGTGTGCCATATACTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGTCCATGCGTACAAGGCCAACAATCTTATGTGCCTGTCTTGGTTTCTCCATCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTACGTGGGCAATGTCAGTCCCATTCTTCCCAATCTTGGTTACAATTCTGTCAATTTGGAAGAGTCGTATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAACGCTACCCGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAACGGCACCTGCAAGTATGGATCTGATTGCAAATTCCATCATCCAAAACAAAGAATTGCACAATCAGCAACTAATGCGCTTGGACTTCCTTCAAGACCCGGACAAGCTATATGTTCATACTACAATATGTATGGGATCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAATTATGGCTTCACTCTGCCTGTGCTTGATTCATCTTTTATAAAGTATCCCAGCAACAACTTCACAATGTCCTCACATGAGACTTTGCCCCAAACATTATCTAAATCTTCTGAATGGGTTCAGAAAGCCGATCCATCGAACAACAAATGCCGAACTACCGATTCGAAAGTCGTAGTAGAGAGCACAGCTGAAGAGGCGACCTCTGTTTCATGCTCATTACCAGGTGGTTCAGAAACTTTGCAAGATCAATCTGGTTGA | 1311 | 44.62 | MPDNLQVQRNAVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNMLPQARPGALGSGGTPFMPSSGVPYTGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVGNVSPILPNLGYNSVNLEESYSNGQLALSTSTPTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAICSYYNMYGICKYGPSCKFDHPSATYPYNYGFTLPVLDSSFIKYPSNNFTMSSHETLPQTLSKSSEWVQKADPSNNKCRTTDSKVVVESTAEEATSVSCSLPGGSETLQDQSG | 436 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 32059801 | 32063368 | + | ClG42_02g0185600.10 | Clacu02g1856 | 243924 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g1856 | 436 | Gene3D | - | 43 | 121 | - | - | |
| Clacu02g1856 | 436 | Gene3D | - | 274 | 353 | - | - | |
| Clacu02g1856 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 115 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 278 | 303 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 47 | 72 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 321 | 345 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | SUPERFAMILY | CCCH zinc finger | 132 | 161 | IPR036855 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | SUPERFAMILY | CCCH zinc finger | 93 | 117 | IPR036855 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | SUPERFAMILY | CCCH zinc finger | 51 | 73 | IPR036855 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 276 | 304 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | Gene3D | - | 122 | 170 | - | - | |
| Clacu02g1856 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | SUPERFAMILY | CCCH zinc finger | 322 | 347 | IPR036855 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 319 | 347 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 116 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | PANTHER | PROTEIN PHOSPHATASE RELATED | 16 | 347 | IPR050974 | GO:0003729(PANTHER) | |
| Clacu02g1856 | 436 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | SMART | c3hfinal6 | 88 | 115 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | SMART | c3hfinal6 | 276 | 303 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | SMART | c3hfinal6 | 319 | 346 | IPR000571 | GO:0046872(InterPro) | |
| Clacu02g1856 | 436 | SUPERFAMILY | CCCH zinc finger | 280 | 304 | IPR036855 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g1856 | Clacu-Chr2:32059801 | Clacu03g0340 | Clacu-Chr3:3901126 | 5.10E-21 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 47295 | PF00642 | zf-CCCH | 8.10E-09 | CL0537 | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g1856 | - | - | - | 0.0 |