Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1877 ATGTCGGCAAAATCGTTGACTTGGCCCAGCCCAAACATAAACCCTAGTAGCGCAAACTCTCCATTCGCCTTGATACCGCATATTAAGCGTTTTATCATTTCCTACCACCTCTCATTCCTCCTCTTCCGCTCGTTGTTTGCTGCTCTGTGCTCCTATAATCTTCTGTGCAGGTTGAAGGGGAGTGCCTTCCTTTGCTCTCCCTCAGTTCATAGTCCTCTTATTCCTCGGGTGAAGTTTACAGCCGAGGAGCTCCGTCGGATTATGGACTTTAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCAACACTTACGGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACGAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCGAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCCGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACGGTGGAGGATGTGCCGTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCGCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTAAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATTTACGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCTTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACTCCATTGTCTGAGTTTGAGGACAAGCTGTAG 2757 47.59 MSAKSLTWPSPNINPSSANSPFALIPHIKRFIISYHLSFLLFRSLFAALCSYNLLCRLKGSAFLCSPSVHSPLIPRVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32257797 32261593 + ClG42_02g0187700.10 Clacu02g1877 243945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1877 918 FunFam Translation elongation factor 2 561 638 - -
Clacu02g1877 918 Pfam Elongation factor Tu domain 2 469 537 IPR004161 GO:0005525(InterPro)
Clacu02g1877 918 FunFam Translation elongation factor 2 644 797 - -
Clacu02g1877 918 Pfam Elongation factor Tu GTP binding domain 93 296 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1877 918 CDD EF2_snRNP_III 562 634 - -
Clacu02g1877 918 FunFam Translation elongation factor 2 78 312 - -
Clacu02g1877 918 Gene3D Translation factors 418 559 - -
Clacu02g1877 918 SUPERFAMILY Translation proteins 417 551 IPR009000 -
Clacu02g1877 918 CDD aeEF2_snRNP_like_IV 634 806 - -
Clacu02g1877 918 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Clacu02g1877 918 Gene3D - 645 797 IPR014721 -
Clacu02g1877 918 Pfam Elongation factor G, domain IV 685 797 IPR005517 GO:0005525(InterPro)
Clacu02g1877 918 Pfam Elongation Factor G, domain III 562 624 IPR041095 -
Clacu02g1877 918 SMART EFG_IV_2 681 797 IPR005517 GO:0005525(InterPro)
Clacu02g1877 918 SUPERFAMILY EF-G C-terminal domain-like 802 913 IPR035647 -
Clacu02g1877 918 Gene3D Elongation Factor G (Translational Gtpase), domain 3 561 638 - -
Clacu02g1877 918 Pfam Elongation factor G C-terminus 799 885 IPR000640 -
Clacu02g1877 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 416 IPR027417 -
Clacu02g1877 918 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 79 917 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Clacu02g1877 918 SUPERFAMILY EF-G C-terminal domain-like 559 635 IPR035647 -
Clacu02g1877 918 FunFam Translation elongation factor 2 798 918 - -
Clacu02g1877 918 NCBIfam small GTP-binding protein domain 95 251 IPR005225 GO:0005525(InterPro)
Clacu02g1877 918 SUPERFAMILY Ribosomal protein S5 domain 2-like 637 801 IPR020568 -
Clacu02g1877 918 CDD EF2 95 305 - -
Clacu02g1877 918 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 92 419 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1877 918 FunFam Translation elongation factor 2 418 559 - -
Clacu02g1877 918 Gene3D - 798 918 - -
Clacu02g1877 918 CDD eEF2_snRNP_like_C 802 880 - -
Clacu02g1877 918 PRINTS GTP-binding elongation factor signature 228 237 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1877 918 PRINTS GTP-binding elongation factor signature 96 109 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1877 918 PRINTS GTP-binding elongation factor signature 192 203 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1877 918 PRINTS GTP-binding elongation factor signature 176 186 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1877 918 PRINTS GTP-binding elongation factor signature 140 148 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1877 918 SMART EFG_C_a 799 888 IPR000640 -
Clacu02g1877 918 CDD EF2_II 450 545 - -
Clacu02g1877 918 Gene3D - 78 312 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1759 Clacu-Chr2:31147666 Clacu02g1877 Clacu-Chr2:32257797 6.90E-167 dispersed
Clacu02g1877 Clacu-Chr2:32257797 Clacu02g1895 Clacu-Chr2:32446971 0.00E+00 dispersed
Clacu02g1877 Clacu-Chr2:32257797 Clacu02g1878 Clacu-Chr2:32268201 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1877 K03234 - csv:101209544 1650.57