Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1878 ATGGATGCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCTTCGCTTAAGCCAGAACGTGAAGGTTCGCCTGTGGTTACCGACGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGTGACTTGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGGCCGGATGTCGTTGAGTTACTACTCGAAAGGGGTGCGGACGTCGACGTTCAGGACCAATGGGGCAGCACGGCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAGAAACAAGGTGCAAAGCTACCGATGGCTCCAATGCTCGTACAAAATGCTCGTGAAGTTCCGGAATACGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACCGACGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGATACGGCATCCGAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTCGTAAAGTTTGCTCTTGACATTGCAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTCGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCGAATAGGGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCAGGACACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTAGCCAAAGCTTATATAGCTAACGAACGCCCCCCATTTACGGCTCCACCAAAGCATTATGCACTCGGAATACAGGAGCTCATTCAGGAATGTTGGGATGAGAATCCGCATAAAAGACCCACATTTCGGCAATTAATAAGAAGGTTGGAGGATATTAACACTCGACTCATGCAAACGAGAAGCTTAAAGTTGACTTGGCCCAGCCCAATCGCAAACCCTAGGTGGCGCAAAAGGAAATGCTTCATTGATACCGCATATTCGGCGTCGCCATCACTTCCCACCACCTCTTATCCCTCCTCTCCCGCACTCTGTTTCGCTTCTTGTACTACTCTTTTGTGGAGGCTCAAGGGACAGTCTCTTCCTTTGCTCTCCCTTCATCGTCTCCCTGTTTCTTCTTTCCCTGTTACATATGCTTTTTTTCGGCAGTTAATAATCTCTAATTCTTGGACATCGGGAAGTTTGAAGACTTGTCAAGATGGTCAGTATGCTCTTCTCTTGACGATGTTAATTTTGCGATCTGGAAAGTACTTTTTCACTTTAATAATCATCTTTAATCTTTTCTGTGTTCAGGTGAAGTTTACAGCCGAGGAGCTTCGTAGGATTATGGACTTTAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGAAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACGAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCGAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCCGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACGGTGGAGGATGTGCCGTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCGCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTAAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATTTACGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCTTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACCCCACTTTCCGAGTTCGAGGACAAGCTGTAG 4197 46.27 MDANVRARFTLGKQSSLKPEREGSPVVTDELDDSIAIDPGIKLMYLANDGDLDGIRELLDSGTDVNFHDTDGRTSLHVAACQGRPDVVELLLERGADVDVQDQWGSTALADAIYYKNHDVIKLLEKQGAKLPMAPMLVQNAREVPEYEINPNELDFSKSVNITKGTFRSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCQDTSWRYAAPEVYKNEEYDTKVDVFSFSLILQEMIEGNPPFPTMPENEVAKAYIANERPPFTAPPKHYALGIQELIQECWDENPHKRPTFRQLIRRLEDINTRLMQTRSLKLTWPSPIANPRWRKRKCFIDTAYSASPSLPTTSYPSSPALCFASCTTLLWRLKGQSLPLLSLHRLPVSSFPVTYAFFRQLIISNSWTSGSLKTCQDGQYALLLTMLILRSGKYFFTLIIIFNLFCVQVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32268201 32282685 + ClG42_02g0187800.10 Clacu02g1878 243946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1878 1398 SMART EFG_IV_2 1161 1277 IPR005517 GO:0005525(InterPro)
Clacu02g1878 1398 SUPERFAMILY Ankyrin repeat 42 133 IPR036770 -
Clacu02g1878 1398 NCBIfam small GTP-binding protein domain 575 730 IPR005225 GO:0005525(InterPro)
Clacu02g1878 1398 Gene3D - 1125 1277 IPR014721 -
Clacu02g1878 1398 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Clacu02g1878 1398 Gene3D Transferase(Phosphotransferase) domain 1 232 436 - -
Clacu02g1878 1398 SUPERFAMILY EF-G C-terminal domain-like 1039 1115 IPR035647 -
Clacu02g1878 1398 Gene3D Translation factors 898 1039 - -
Clacu02g1878 1398 SMART EFG_C_a 1279 1368 IPR000640 -
Clacu02g1878 1398 Pfam Ankyrin repeats (3 copies) 43 130 IPR002110 GO:0005515(InterPro)
Clacu02g1878 1398 ProSiteProfiles Protein kinase domain profile. 121 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1878 1398 Gene3D - 558 792 IPR027417 -
Clacu02g1878 1398 Pfam Elongation Factor G, domain III 1042 1104 IPR041095 -
Clacu02g1878 1398 CDD STKc_MAP3K-like 162 415 - -
Clacu02g1878 1398 CDD aeEF2_snRNP_like_IV 1114 1286 - -
Clacu02g1878 1398 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Clacu02g1878 1398 FunFam Translation elongation factor 2 1124 1277 - -
Clacu02g1878 1398 FunFam Os01g0748600 protein 142 433 - -
Clacu02g1878 1398 Gene3D - 34 142 IPR036770 -
Clacu02g1878 1398 FunFam Translation elongation factor 2 1041 1118 - -
Clacu02g1878 1398 FunFam Translation elongation factor 2 1278 1398 - -
Clacu02g1878 1398 CDD EF2_II 930 1025 - -
Clacu02g1878 1398 CDD eEF2_snRNP_like_C 1282 1360 - -
Clacu02g1878 1398 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 558 1397 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Clacu02g1878 1398 SUPERFAMILY Protein kinase-like (PK-like) 173 451 IPR011009 -
Clacu02g1878 1398 CDD EF2 575 785 - -
Clacu02g1878 1398 FunFam Translation elongation factor 2 898 1039 - -
Clacu02g1878 1398 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Clacu02g1878 1398 Gene3D - 1278 1398 - -
Clacu02g1878 1398 Pfam Elongation factor G C-terminus 1279 1365 IPR000640 -
Clacu02g1878 1398 Pfam Elongation factor Tu GTP binding domain 573 776 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1878 1398 FunFam Integrin-linked protein kinase family 24 147 - -
Clacu02g1878 1398 FunFam Translation elongation factor 2 558 792 - -
Clacu02g1878 1398 ProSiteProfiles Ankyrin repeat region circular profile. 71 102 - -
Clacu02g1878 1398 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 572 899 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1878 1398 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1041 1118 - -
Clacu02g1878 1398 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Clacu02g1878 1398 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Clacu02g1878 1398 SMART ANK_2a 39 67 IPR002110 GO:0005515(InterPro)
Clacu02g1878 1398 SUPERFAMILY EF-G C-terminal domain-like 1282 1393 IPR035647 -
Clacu02g1878 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 896 IPR027417 -
Clacu02g1878 1398 SUPERFAMILY Ribosomal protein S5 domain 2-like 1117 1281 IPR020568 -
Clacu02g1878 1398 CDD EF2_snRNP_III 1042 1114 - -
Clacu02g1878 1398 Pfam Protein tyrosine and serine/threonine kinase 161 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1878 1398 Pfam Elongation factor Tu domain 2 949 1017 IPR004161 GO:0005525(InterPro)
Clacu02g1878 1398 Pfam Elongation factor G, domain IV 1165 1277 IPR005517 GO:0005525(InterPro)
Clacu02g1878 1398 PRINTS GTP-binding elongation factor signature 656 666 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1878 1398 PRINTS GTP-binding elongation factor signature 576 589 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1878 1398 PRINTS GTP-binding elongation factor signature 620 628 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1878 1398 PRINTS GTP-binding elongation factor signature 672 683 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1878 1398 PRINTS GTP-binding elongation factor signature 708 717 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g1878 1398 SUPERFAMILY Translation proteins 897 1031 IPR009000 -
Clacu02g1878 1398 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 613 628 IPR031157 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1878 Clacu-Chr2:32268201 Clacu05g2600 Clacu-Chr5:33827712 5.50E-69 dispersed
Clacu02g1877 Clacu-Chr2:32257797 Clacu02g1878 Clacu-Chr2:32268201 0.00E+00 tandem
Clacu01g0383 Clacu-Chr1:3865040 Clacu02g1878 Clacu-Chr2:32268201 2.30E-40 transposed
Clacu02g1759 Clacu-Chr2:31147666 Clacu02g1878 Clacu-Chr2:32268201 6.90E-167 transposed
Clacu02g1895 Clacu-Chr2:32446971 Clacu02g1878 Clacu-Chr2:32268201 0.00E+00 transposed
Clacu06g0252 Clacu-Chr6:2997601 Clacu02g1878 Clacu-Chr2:32268201 2.20E-32 transposed
Clacu09g1065 Clacu-Chr9:10117686 Clacu02g1878 Clacu-Chr2:32268201 1.50E-116 transposed
Clacu09g1880 Clacu-Chr9:33646988 Clacu02g1878 Clacu-Chr2:32268201 6.70E-21 transposed
Clacu10g1651 Clacu-Chr10:29915385 Clacu02g1878 Clacu-Chr2:32268201 4.20E-22 transposed
Clacu09g1433 Clacu-Chr9:20259546 Clacu02g1878 Clacu-Chr2:32268201 3.70E-86 transposed
Clacu01g2485 Clacu-Chr1:35250137 Clacu02g1878 Clacu-Chr2:32268201 4.00E-129 wgd
Clacu02g1878 Clacu-Chr2:32268201 Clacu03g0733 Clacu-Chr3:8172960 5.80E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73354 PF00009 GTP_EFTU 6.30E-66 CL0023 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1878 K03234 - csv:101209544 1650.57