Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g1878 | ATGGATGCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCTTCGCTTAAGCCAGAACGTGAAGGTTCGCCTGTGGTTACCGACGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGTGACTTGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGGCCGGATGTCGTTGAGTTACTACTCGAAAGGGGTGCGGACGTCGACGTTCAGGACCAATGGGGCAGCACGGCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAGAAACAAGGTGCAAAGCTACCGATGGCTCCAATGCTCGTACAAAATGCTCGTGAAGTTCCGGAATACGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACCGACGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGATACGGCATCCGAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTCGTAAAGTTTGCTCTTGACATTGCAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTCGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCGAATAGGGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCAGGACACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTAGCCAAAGCTTATATAGCTAACGAACGCCCCCCATTTACGGCTCCACCAAAGCATTATGCACTCGGAATACAGGAGCTCATTCAGGAATGTTGGGATGAGAATCCGCATAAAAGACCCACATTTCGGCAATTAATAAGAAGGTTGGAGGATATTAACACTCGACTCATGCAAACGAGAAGCTTAAAGTTGACTTGGCCCAGCCCAATCGCAAACCCTAGGTGGCGCAAAAGGAAATGCTTCATTGATACCGCATATTCGGCGTCGCCATCACTTCCCACCACCTCTTATCCCTCCTCTCCCGCACTCTGTTTCGCTTCTTGTACTACTCTTTTGTGGAGGCTCAAGGGACAGTCTCTTCCTTTGCTCTCCCTTCATCGTCTCCCTGTTTCTTCTTTCCCTGTTACATATGCTTTTTTTCGGCAGTTAATAATCTCTAATTCTTGGACATCGGGAAGTTTGAAGACTTGTCAAGATGGTCAGTATGCTCTTCTCTTGACGATGTTAATTTTGCGATCTGGAAAGTACTTTTTCACTTTAATAATCATCTTTAATCTTTTCTGTGTTCAGGTGAAGTTTACAGCCGAGGAGCTTCGTAGGATTATGGACTTTAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGAAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACGAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCGAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCCGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACGGTGGAGGATGTGCCGTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCGCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTAAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATTTACGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCTTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACCCCACTTTCCGAGTTCGAGGACAAGCTGTAG | 4197 | 46.27 | MDANVRARFTLGKQSSLKPEREGSPVVTDELDDSIAIDPGIKLMYLANDGDLDGIRELLDSGTDVNFHDTDGRTSLHVAACQGRPDVVELLLERGADVDVQDQWGSTALADAIYYKNHDVIKLLEKQGAKLPMAPMLVQNAREVPEYEINPNELDFSKSVNITKGTFRSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCQDTSWRYAAPEVYKNEEYDTKVDVFSFSLILQEMIEGNPPFPTMPENEVAKAYIANERPPFTAPPKHYALGIQELIQECWDENPHKRPTFRQLIRRLEDINTRLMQTRSLKLTWPSPIANPRWRKRKCFIDTAYSASPSLPTTSYPSSPALCFASCTTLLWRLKGQSLPLLSLHRLPVSSFPVTYAFFRQLIISNSWTSGSLKTCQDGQYALLLTMLILRSGKYFFTLIIIFNLFCVQVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL | 1398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 32268201 | 32282685 | + | ClG42_02g0187800.10 | Clacu02g1878 | 243946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g1878 | 1398 | SMART | EFG_IV_2 | 1161 | 1277 | IPR005517 | GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | SUPERFAMILY | Ankyrin repeat | 42 | 133 | IPR036770 | - | |
Clacu02g1878 | 1398 | NCBIfam | small GTP-binding protein domain | 575 | 730 | IPR005225 | GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | Gene3D | - | 1125 | 1277 | IPR014721 | - | |
Clacu02g1878 | 1398 | ProSiteProfiles | Ankyrin repeat profile. | 71 | 103 | IPR002110 | GO:0005515(InterPro) | |
Clacu02g1878 | 1398 | Gene3D | Transferase(Phosphotransferase) domain 1 | 232 | 436 | - | - | |
Clacu02g1878 | 1398 | SUPERFAMILY | EF-G C-terminal domain-like | 1039 | 1115 | IPR035647 | - | |
Clacu02g1878 | 1398 | Gene3D | Translation factors | 898 | 1039 | - | - | |
Clacu02g1878 | 1398 | SMART | EFG_C_a | 1279 | 1368 | IPR000640 | - | |
Clacu02g1878 | 1398 | Pfam | Ankyrin repeats (3 copies) | 43 | 130 | IPR002110 | GO:0005515(InterPro) | |
Clacu02g1878 | 1398 | ProSiteProfiles | Protein kinase domain profile. | 121 | 422 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu02g1878 | 1398 | Gene3D | - | 558 | 792 | IPR027417 | - | |
Clacu02g1878 | 1398 | Pfam | Elongation Factor G, domain III | 1042 | 1104 | IPR041095 | - | |
Clacu02g1878 | 1398 | CDD | STKc_MAP3K-like | 162 | 415 | - | - | |
Clacu02g1878 | 1398 | CDD | aeEF2_snRNP_like_IV | 1114 | 1286 | - | - | |
Clacu02g1878 | 1398 | Gene3D | Phosphorylase Kinase; domain 1 | 148 | 231 | - | - | |
Clacu02g1878 | 1398 | FunFam | Translation elongation factor 2 | 1124 | 1277 | - | - | |
Clacu02g1878 | 1398 | FunFam | Os01g0748600 protein | 142 | 433 | - | - | |
Clacu02g1878 | 1398 | Gene3D | - | 34 | 142 | IPR036770 | - | |
Clacu02g1878 | 1398 | FunFam | Translation elongation factor 2 | 1041 | 1118 | - | - | |
Clacu02g1878 | 1398 | FunFam | Translation elongation factor 2 | 1278 | 1398 | - | - | |
Clacu02g1878 | 1398 | CDD | EF2_II | 930 | 1025 | - | - | |
Clacu02g1878 | 1398 | CDD | eEF2_snRNP_like_C | 1282 | 1360 | - | - | |
Clacu02g1878 | 1398 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 558 | 1397 | - | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER) | |
Clacu02g1878 | 1398 | SUPERFAMILY | Protein kinase-like (PK-like) | 173 | 451 | IPR011009 | - | |
Clacu02g1878 | 1398 | CDD | EF2 | 575 | 785 | - | - | |
Clacu02g1878 | 1398 | FunFam | Translation elongation factor 2 | 898 | 1039 | - | - | |
Clacu02g1878 | 1398 | FunFam | serine/threonine-protein kinase STY46-like | 149 | 232 | - | - | |
Clacu02g1878 | 1398 | Gene3D | - | 1278 | 1398 | - | - | |
Clacu02g1878 | 1398 | Pfam | Elongation factor G C-terminus | 1279 | 1365 | IPR000640 | - | |
Clacu02g1878 | 1398 | Pfam | Elongation factor Tu GTP binding domain | 573 | 776 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | FunFam | Integrin-linked protein kinase family | 24 | 147 | - | - | |
Clacu02g1878 | 1398 | FunFam | Translation elongation factor 2 | 558 | 792 | - | - | |
Clacu02g1878 | 1398 | ProSiteProfiles | Ankyrin repeat region circular profile. | 71 | 102 | - | - | |
Clacu02g1878 | 1398 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 572 | 899 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 1041 | 1118 | - | - | |
Clacu02g1878 | 1398 | SMART | ANK_2a | 71 | 100 | IPR002110 | GO:0005515(InterPro) | |
Clacu02g1878 | 1398 | SMART | ANK_2a | 104 | 133 | IPR002110 | GO:0005515(InterPro) | |
Clacu02g1878 | 1398 | SMART | ANK_2a | 39 | 67 | IPR002110 | GO:0005515(InterPro) | |
Clacu02g1878 | 1398 | SUPERFAMILY | EF-G C-terminal domain-like | 1282 | 1393 | IPR035647 | - | |
Clacu02g1878 | 1398 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 559 | 896 | IPR027417 | - | |
Clacu02g1878 | 1398 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 1117 | 1281 | IPR020568 | - | |
Clacu02g1878 | 1398 | CDD | EF2_snRNP_III | 1042 | 1114 | - | - | |
Clacu02g1878 | 1398 | Pfam | Protein tyrosine and serine/threonine kinase | 161 | 415 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu02g1878 | 1398 | Pfam | Elongation factor Tu domain 2 | 949 | 1017 | IPR004161 | GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | Pfam | Elongation factor G, domain IV | 1165 | 1277 | IPR005517 | GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | PRINTS | GTP-binding elongation factor signature | 656 | 666 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | PRINTS | GTP-binding elongation factor signature | 576 | 589 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | PRINTS | GTP-binding elongation factor signature | 620 | 628 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | PRINTS | GTP-binding elongation factor signature | 672 | 683 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | PRINTS | GTP-binding elongation factor signature | 708 | 717 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Clacu02g1878 | 1398 | SUPERFAMILY | Translation proteins | 897 | 1031 | IPR009000 | - | |
Clacu02g1878 | 1398 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 613 | 628 | IPR031157 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1878 | Clacu-Chr2:32268201 | Clacu05g2600 | Clacu-Chr5:33827712 | 5.50E-69 | dispersed | |
Clacu02g1877 | Clacu-Chr2:32257797 | Clacu02g1878 | Clacu-Chr2:32268201 | 0.00E+00 | tandem | |
Clacu01g0383 | Clacu-Chr1:3865040 | Clacu02g1878 | Clacu-Chr2:32268201 | 2.30E-40 | transposed | |
Clacu02g1759 | Clacu-Chr2:31147666 | Clacu02g1878 | Clacu-Chr2:32268201 | 6.90E-167 | transposed | |
Clacu02g1895 | Clacu-Chr2:32446971 | Clacu02g1878 | Clacu-Chr2:32268201 | 0.00E+00 | transposed | |
Clacu06g0252 | Clacu-Chr6:2997601 | Clacu02g1878 | Clacu-Chr2:32268201 | 2.20E-32 | transposed | |
Clacu09g1065 | Clacu-Chr9:10117686 | Clacu02g1878 | Clacu-Chr2:32268201 | 1.50E-116 | transposed | |
Clacu09g1880 | Clacu-Chr9:33646988 | Clacu02g1878 | Clacu-Chr2:32268201 | 6.70E-21 | transposed | |
Clacu10g1651 | Clacu-Chr10:29915385 | Clacu02g1878 | Clacu-Chr2:32268201 | 4.20E-22 | transposed | |
Clacu09g1433 | Clacu-Chr9:20259546 | Clacu02g1878 | Clacu-Chr2:32268201 | 3.70E-86 | transposed | |
Clacu01g2485 | Clacu-Chr1:35250137 | Clacu02g1878 | Clacu-Chr2:32268201 | 4.00E-129 | wgd | |
Clacu02g1878 | Clacu-Chr2:32268201 | Clacu03g0733 | Clacu-Chr3:8172960 | 5.80E-143 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73354 | PF00009 | GTP_EFTU | 6.30E-66 | CL0023 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g1878 | K03234 | - | csv:101209544 | 1650.57 |