Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1880 ATGAGTAAACAGAAGGTCTTTCCAACCAATTTAGAGGGGTTCTTCCACCATATATCCTTTCTTCCACTCTCTTCACTAAAGTCTAATCTTCCTTTTTTCTTATCTCACCAAGATTTCAGCCACCAAGCTGGAGAAGGATCTGCCTCTTCCCAAAAAAAAATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTTACCTTTTGCAAGAGAAGAAATGGATTGCTCAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTACTCGTGGCCGTCTCTATGAATATGCAAATAATAGTGTTAGAGGAACAATTGAGAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCCGGATTATCAGTTGCGGAAGCTAATGTACAGTTTTACCAACAAGAAGCCTCCAAGCTGAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATTCTGGGAGAAGCACTCAGCTCATTGTCATTAAAGGACCTCAAAAGTCTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCCAAAAAGAACGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAACGGGAAATGGAGCTTCAGAACCACAACAACTATCTGCGAGCACAGATTGCTGAACACGAAAGAATACAACAACAGCAGCAACAACAAACGAACATGATGCAAAGGGCAACATATGAGAGTGTGGGAGGGCAATACGATGAGAATAGAAGTTATGGGGCTGTGGGACTTATGGATTCAGACACTCATTACGCCCATCAAGACCATCTCACTGCCCTTCAGCTTGTTTAA 855 41.29 MSKQKVFPTNLEGFFHHISFLPLSSLKSNLPFFLSHQDFSHQAGEGSASSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQQQTNMMQRATYESVGGQYDENRSYGAVGLMDSDTHYAHQDHLTALQLV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32295873 32303806 + ClG42_02g0188000.10 Clacu02g1880 243948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1880 284 FunFam agamous-like MADS-box protein AGL11 66 150 - -
Clacu02g1880 284 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 63 110 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu02g1880 284 Coils Coil 134 161 - -
Clacu02g1880 284 ProSitePatterns MADS-box domain signature. 56 110 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu02g1880 284 Gene3D - 67 129 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu02g1880 284 Coils Coil 178 198 - -
Clacu02g1880 284 ProSiteProfiles MADS-box domain profile. 54 114 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu02g1880 284 PRINTS MADS domain signature 56 76 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu02g1880 284 PRINTS MADS domain signature 76 91 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu02g1880 284 PRINTS MADS domain signature 91 112 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu02g1880 284 PANTHER SERUM RESPONSE FACTOR HOMOLOG 54 242 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu02g1880 284 ProSiteProfiles K-box domain profile. 141 231 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu02g1880 284 CDD MADS_MEF2_like 55 131 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu02g1880 284 SMART madsneu2 54 113 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu02g1880 284 SUPERFAMILY SRF-like 55 126 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu02g1880 284 Pfam K-box region 140 225 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1880 Clacu-Chr2:32295873 Clacu08g0058 Clacu-Chr8:1344694 4.90E-65 dispersed
Clacu01g2487 Clacu-Chr1:35266813 Clacu02g1880 Clacu-Chr2:32295873 1.20E-72 wgd
Clacu02g1880 Clacu-Chr2:32295873 Clacu03g0731 Clacu-Chr3:8139602 5.90E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47298 PF01486 K-box 4.50E-25 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1880 K09264 - csv:101217987 406.371