Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1884 ATGGATGGTAATTTTGGGAGGTTTATTGGGTTTTGGTTTGATGGAGGATTGGGGAAGGTTCATGGAAAAGTGGGCTTCTGCACTTGTGATCCGAAATTTGCACTTCCGCCCCCCATTTTGCCCAGAATGCAGCCAGATCAAGCCAAAAAGAATTCAACCGAAGTGGAGTTCTTTTCTGATTATGGCGATGCGAGTAGATACAAAATTCAGGAAGTAATCGGGAAAGGAAGCTATGGGGTTGTCTGTTCCGCAATTGACACCCGCACCGGCGACAAGGTTGCAATAAAGAAGATACATAATATTTTTGAGCATATATCTGACGCGGTTAGAATTCTTCGTGAGATAAAGCTGCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACACATTATGCTGCCACCTTCAAGGAGGGATTTCAAAGATATCTATGTTGTTTTCGAGCTCATGGAATCAGATCTCCACCAAGTTATTAAAGCAAATGATGATCTGACTCGAGAACATTATCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAATATATCCATACAGCGAATGTCTACCATCGTGATTTAAAACCAAAGAATATATTAGCAAATGCAAATTGTAAACTTAAAATTTGTGATTTTGGATTAGCAAGAGTTGCCTTCAGTGACACACCAACAACAATTTTCTGGACGGATTATGTTGCTACTAGGTGGTACCGAGCTCCAGAGCTGTGTGGTTCATTTTTCTCGAAGTATACACCTGCAATTGATATATGGAGTATTGGCTGCATATTTGCTGAAGTATTAATGGGGAAGCCACTTTTTCCTGGTAAAAACGTTGTCCACCAGCTTGATTTGATGACAGATCTCCTTGGAACTCCTTCATTAGATACAATCTCCAGGGTACGTAATGACAAGGCTAGAAGATATTTAACTACTATGAGGAAAAAGCAGCCGGTACCATTTTCTCAAAAGTTCCCAAATGCAGATCCATTAGCGCTGAGGCTACTAGAAAGACTGCTTGCTTTTGATCCAAAAGATAGACCAACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGATTGGCAAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCACAAAGATGGAATTTGAATTTGAGAGACGGAGGGTCACAAAAGAAGACATTCAAGAGCTAATCTTCCGGGAGATACTAGAATATCATCCTCAGCTACTAAAAGACTACATGAATGGGACGGAGAGAACGAATTTTCTATATCCAAGTGCTGTTGACCAATTTAGAAAGCAGTTTGCGCATCTGGAGGAAAATGGTGGTAAAAGTGCGCCAGTTATTCCTCTTGACAGAAAGCATGTGTCCCTTCCAAGGTCAACAGTTGTACATTCGAACCCGGTCTATTCTAAGGACCAAGTAAATAATGTAACTCTCCAAGATGGGAAGATCTCTGAAGAGGCATACGGCAAGAATTCCCGAGATAGTGAAGGACGGCTAACAAATATATCGAGGGCCATGCAGGCACCACAAAAAATCCCATTTGCAGCTAAGCCTGGAAGAGTGGTTGGACCGGTTATAGCAGATGAGAATGGGAGGCTGGTGAAGGAACCATACGATCCAAGAACGTTGATCCGAGGTGCCATTCTTCCTCCTGCATATCACTACCACCAAAAACCCGTTGCTGGAAATCAAGAAAGATCTGCAGCAGAAACTAAACTTGATATTTCTTTAAGGGCCGCTAAGCAAGCATCCCAGTGTGGCATGGCTTCCAAATTAGGATCAGATATTGCCATCAGCATTGACTCGAACCCCTTTTACATGACACGTGCCGGAGTGAACAAGGTCGAACTCAAGGACCAAATATCCATCGATGCAAACTTTCTTCAGGCCAAGGCCGCCCAATACGGTGGTCTTAGTGCAGCAACAGCCACCGCCACATCGGTTGCTCACAGAAAGGTGGTTGCGGGAATATTAATGGAGAACGAGATTAATATTGTAAATGACGGGGCATCGGGGGACGATCAGACCACAGAGGATTTTTTTGATGTTGACCAGCGGGAGAACGATGCAAAGGTCGCGGAGCTGAACCATAGAATTGAGGTTTTGGAGCGTGAAAAGAAAAAATTGGTTGATGAAAATGAAGAAATCAAAGATAAGATTAAAAGGTTGTCAGCGGAGATTGAAGGGTTGAAGAGTGAAGAGGGGAGGCTGATAGAACAACTGAAAGAAATGGAGAAACAAGTTGAACGTTCTGAAGAGGGAAATAAGGTGGTAGAGTCGGTTGCGGCAAGGGCACTGGAGCTTGAGACTGAAGTCTCGAGGCTACAGCATGATTTGATATCTGCAATGAATGGAGCTGATGAGGCGAATGCTGAAGTTGCGGAGTTGAGGAAAAATTTGGGGGAAAAGGGAGTGAAGGTTGCAGCTCTGGAGGAAGAGTTGGAAGCCCTGAAGAAAGCAAAGGCAGAGAGTGAAAAGAAAGTCAGAGAATTGGAGAGGAAAGTTGGGGTTTTGGAGGTCAAGGAGATAGAGGAGAAGAGTAAAAAAGTTAGGGTAGAGGAGGAAATGAGAGACAAAATTGAGGAGAAAGAGAGGGAAATCACCAGTTTCAAAAAGACTATTGAGAATTTGGAATTGGTGGTAACAAAGAACGGCCTGGAATTAGATAAGTGGATCAAGGAGAAACTTAAGGTGGAAGAGTTGTTGAAGGAGTCAGAGGAGAAAACGAAAATGTTTGAGTCGAAAATGGTTCAGTTGCAGAAGGAAGTAGAGGAAGCACAGAAAGTCATTAGTGGATTAAAGGAGAAAGCGGTGAATGCGTTGAATGGAACTGCAGAGGAACTCAAGTCGGCTTTCGAAGGTGCAGAGAAGGAGTTGAATTTGAACTGGCCTATAATTGCAGGTTCAACAGGAGTTGTTGCTGCCGTCGCTGCACTGGCCTTTGTTTTATCAGCACTCATAAGTTCATGGGTGAAACTCGCAGCTAACTCTTCCTCAAAACAATGGCAGCTAGAGGTGCAGTTGTACGCCGGCATTTGCTAG 3036 43.41 MDGNFGRFIGFWFDGGLGKVHGKVGFCTCDPKFALPPPILPRMQPDQAKKNSTEVEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKMEFEFERRRVTKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSAPVIPLDRKHVSLPRSTVVHSNPVYSKDQVNNVTLQDGKISEEAYGKNSRDSEGRLTNISRAMQAPQKIPFAAKPGRVVGPVIADENGRLVKEPYDPRTLIRGAILPPAYHYHQKPVAGNQERSAAETKLDISLRAAKQASQCGMASKLGSDIAISIDSNPFYMTRAGVNKVELKDQISIDANFLQAKAAQYGGLSAATATATSVAHRKVVAGILMENEINIVNDGASGDDQTTEDFFDVDQRENDAKVAELNHRIEVLEREKKKLVDENEEIKDKIKRLSAEIEGLKSEEGRLIEQLKEMEKQVERSEEGNKVVESVAARALELETEVSRLQHDLISAMNGADEANAEVAELRKNLGEKGVKVAALEEELEALKKAKAESEKKVRELERKVGVLEVKEIEEKSKKVRVEEEMRDKIEEKEREITSFKKTIENLELVVTKNGLELDKWIKEKLKVEELLKESEEKTKMFESKMVQLQKEVEEAQKVISGLKEKAVNALNGTAEELKSAFEGAEKELNLNWPIIAGSTGVVAAVAALAFVLSALISSWVKLAANSSSKQWQLEVQLYAGIC 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32334070 32342921 - ClG42_02g0188400.10 Clacu02g1884 243952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1884 1011 FunFam Mitogen-activated protein kinase 153 381 - -
Clacu02g1884 1011 ProSiteProfiles Protein kinase domain profile. 67 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1884 1011 FunFam Mitogen-activated protein kinase 57 160 - -
Clacu02g1884 1011 Coils Coil 886 934 - -
Clacu02g1884 1011 Pfam Protein kinase domain 67 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1884 1011 Coils Coil 841 878 - -
Clacu02g1884 1011 Coils Coil 683 839 - -
Clacu02g1884 1011 Gene3D Transferase(Phosphotransferase) domain 1 153 381 - -
Clacu02g1884 1011 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 64 399 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu02g1884 1011 ProSitePatterns Protein kinases ATP-binding region signature. 73 97 IPR017441 GO:0005524(InterPro)
Clacu02g1884 1011 ProSitePatterns MAP kinase signature. 102 205 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1884 1011 Gene3D - 679 848 - -
Clacu02g1884 1011 SUPERFAMILY Protein kinase-like (PK-like) 63 362 IPR011009 -
Clacu02g1884 1011 Coils Coil 936 956 - -
Clacu02g1884 1011 CDD STKc_TDY_MAPK 66 403 - -
Clacu02g1884 1011 Gene3D Phosphorylase Kinase; domain 1 82 404 - -
Clacu02g1884 1011 SMART serkin_6 67 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1884 1011 PRINTS Tropomyosin signature 809 837 IPR000533 -
Clacu02g1884 1011 PRINTS Tropomyosin signature 689 706 IPR000533 -
Clacu02g1884 1011 PRINTS Tropomyosin signature 899 924 IPR000533 -
Clacu02g1884 1011 PRINTS Tropomyosin signature 840 863 IPR000533 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1884 Clacu-Chr2:32334070 Clacu06g1542 Clacu-Chr6:26356467 4.80E-200 dispersed
Clacu06g0566 Clacu-Chr6:6377019 Clacu02g1884 Clacu-Chr2:32334070 2.40E-212 transposed
Clacu07g1032 Clacu-Chr7:24757728 Clacu02g1884 Clacu-Chr2:32334070 8.40E-206 transposed
Clacu02g1884 Clacu-Chr2:32334070 Clacu09g2259 Clacu-Chr9:37358165 2.00E-246 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73355 PF00069 Pkinase 4.20E-66 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1884 - - - 0.0