Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1889 ATGGCAGCTTCATCAATGGCTCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAATTATCCCCCACGACCTCCGACCTCCTGGGCGACGGTCGCATCACCATGAGAAAAACTGCCGGAAAGCCCAAGCCCATTTCCTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAATACCTAGGCCCATTCTCTGGCGAGCCCCCTTCTTATTTGACTGGAGAATTCCCCGGCGATTACGGCTGGGACACCGCCGGTTTATCCGCCGACCCGGAAACTTTCGCGAAAAACCGTGAGCTGGAAGTGATCCACTCGAGATGGGCCATGCTCGGCGCTCTGGGCTGCGTCTTCCCGGAGCTGCTGTCTCGCAACGGAGTAAAATTCGGCGAAGCCGTGTGGTTCAAAGCTGGGTCTCAAATCTTTAGCGAGGGTGGGCTAGATTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTAGCCATTTGGGCTTGTCAAGTTGTGCTAATGGGTGCGGTTGAAGGGTATAGAATTGCGGGGGGGCCATTGGGGGAAATTACTGACCCGATTTACCCAGGTGGGAGCTTTGATCCATTGGGGCTTGCTGATGATCCAGAGGCGTTTGCGGAATTGAAAGTGAAGGAACTTAAGAATGGAAGATTGGCTATGTTTTCGATGTTTGGTTTCTTTGTACAGGCGATTGTGACTGGGAAAGGACCTTTGGAGAATTTGGCTGATCATTTGGCCGATCCTGTTAACAATAATGCTTGGGCTTATGCTACTAACTTTGTACCTGGAAAGTGA 804 53.11 MAASSMALSSPSLAGQAVKLSPTTSDLLGDGRITMRKTAGKPKPISSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32393600 32394403 - ClG42_02g0188900.10 Clacu02g1889 243957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1889 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Clacu02g1889 267 MobiDBLite consensus disorder prediction 28 50 - -
Clacu02g1889 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Clacu02g1889 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
Clacu02g1889 267 Pfam Chlorophyll A-B binding protein 67 234 IPR022796 -
Clacu02g1889 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2514 Clacu-Chr1:35492442 Clacu02g1889 Clacu-Chr2:32393600 3.00E-145 dispersed
Clacu02g0282 Clacu-Chr2:2566692 Clacu02g1889 Clacu-Chr2:32393600 2.90E-120 dispersed
Clacu02g1889 Clacu-Chr2:32393600 Clacu10g1178 Clacu-Chr10:24465764 3.50E-134 dispersed
Clacu08g0197 Clacu-Chr8:3969328 Clacu02g1889 Clacu-Chr2:32393600 1.50E-55 transposed
Clacu11g2093 Clacu-Chr11:31705853 Clacu02g1889 Clacu-Chr2:32393600 1.50E-45 transposed
Clacu01g2513 Clacu-Chr1:35489876 Clacu02g1889 Clacu-Chr2:32393600 2.60E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1889 K08912 - csv:101213845 540.806