Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1901 ATGAAGGAGATCGGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAACAACGAAGCGATGCAGTTAGTTCAATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCGGTGTACGGTTGCGTTGGAGCAATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGCCAATTCCCATCTACCTCCTGCAACCCGACTGCGGGCCACTCGCCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG 522 51.53 MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32536253 32538399 + ClG42_02g0190100.10 Clacu02g1901 243969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1901 173 Coils Coil 94 114 - -
Clacu02g1901 173 MobiDBLite consensus disorder prediction 124 146 - -
Clacu02g1901 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Clacu02g1901 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Clacu02g1901 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1901 Clacu-Chr2:32536253 Clacu07g0465 Clacu-Chr7:5665260 2.60E-45 dispersed
Clacu01g0907 Clacu-Chr1:10716741 Clacu02g1901 Clacu-Chr2:32536253 3.50E-58 transposed
Clacu02g1046 Clacu-Chr2:16620067 Clacu02g1901 Clacu-Chr2:32536253 4.70E-18 transposed
Clacu02g1901 Clacu-Chr2:32536253 Clacu09g2278 Clacu-Chr9:37532957 3.10E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47303 PF03195 LOB 1.00E-43 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1901 - - - 0.0