Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1904 ATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCTATAATTTTTTGCCATAGGTTCTTTCTACGGCAGTCTCATGCAAAGAATGACCGAAGGACAATTGCGACAGTGTGTATGTTTCTCGCAGGAAAGGTCGAAGAAACCCCTCGCCCATTGAAGGATGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAGATTAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGAGTTGTTCTCGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCCTACAAACCCCTTGTCGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAGGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGATTGCCGCCTTCTGGCGAAGCTGATGGAAGCATTGGAGGTGGTCCCACTAATCAAACCCCTACAAAAGCTCCTACCAACAGCGAAGAACGTGCCGTAGCAGACAATCATGCACTTGGTGCAGGTATTGCTACTTCAAGACTTGGAACCTCAAAAGCTGGTTCATCTAGGCCAGCATCTGAACACTCATTTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGTATTGAAAGTTCGAGCGTAGATTTTAGAAGTCCTTCCAATCACAAAACAGGTAGTGAATCTAAGGTTAGACACGAGATGGAGCCATCGGCTTTCCATGACAAAGGAAACGCTCTAAACTCGGTAAAGCATCAGTCAGAGGGATTGGTTGAGCAAGACCATGGAAATGATATGAAAATAAATGAAGCAACAACAAGGGATGCAATGGAACTGAAAGACAAACATGTAATTCGAAATATAGATTTTAGAGAAGGTACACTTGGCAAATCTCAGGACGTTATCAAAAAAATTGATAAGGACAAAGTAAAGGCTGCGCTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGTTGGCAGTGAGAAAAACAAGCGAGAACAGAGGCAAAGTTGGAATAAGTCATCGAATAAACAAGAATATGAGGATTCATATCAAGACAAACATCGAGAGGACGATAAAGACGAGCATCCTCAACGAACGCGACAGTCATTATATAATCTAGATTCTAGCAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTAGGTTATGGGTATCAAGATTCCCCAAAGTCAAACAGTCGTAAGAGAGGCAGGGAACTCACAGGATAA 1509 42.68 MRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEADGSIGGGPTNQTPTKAPTNSEERAVADNHALGAGIATSRLGTSKAGSSRPASEHSFAGDQPSRAMQNHSIESSSVDFRSPSNHKTGSESKVRHEMEPSAFHDKGNALNSVKHQSEGLVEQDHGNDMKINEATTRDAMELKDKHVIRNIDFREGTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAVGSEKNKREQRQSWNKSSNKQEYEDSYQDKHREDDKDEHPQRTRQSLYNLDSSNIEEGEFANANEVGYGYQDSPKSNSRKRGRELTG 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32564920 32578262 - ClG42_02g0190400.10 Clacu02g1904 243972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1904 502 PIRSF Cyclin_L 1 501 - -
Clacu02g1904 502 Gene3D - 1 102 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 414 502 - -
Clacu02g1904 502 Pfam Cyclin-T2-like, C-terminal domain 107 194 - -
Clacu02g1904 502 SMART cyclin_7 109 194 IPR013763 -
Clacu02g1904 502 SMART cyclin_7 1 96 IPR013763 -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 247 289 - -
Clacu02g1904 502 FunFam Cyclin-T1-5 like 104 208 - -
Clacu02g1904 502 PANTHER CYCLIN 1 390 IPR043198 GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0008024(PANTHER)|GO:0016538(PANTHER)|GO:0016538(InterPro)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Clacu02g1904 502 SUPERFAMILY Cyclin-like 105 201 IPR036915 -
Clacu02g1904 502 Gene3D - 104 204 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 460 474 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 437 459 - -
Clacu02g1904 502 CDD CYCLIN_AcCycT_rpt1 1 101 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 211 228 - -
Clacu02g1904 502 Pfam Cyclin, N-terminal domain 2 103 IPR006671 -
Clacu02g1904 502 CDD CYCLIN_AcCycT_rpt2 105 197 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 200 229 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 246 301 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 414 430 - -
Clacu02g1904 502 SUPERFAMILY Cyclin-like 2 104 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0905 Clacu-Chr1:10613646 Clacu02g1904 Clacu-Chr2:32564920 4.10E-138 dispersed
Clacu02g1904 Clacu-Chr2:32564920 Clacu08g1643 Clacu-Chr8:26192407 2.30E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1904 K15188 - csv:101220862 939.102