Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1904 ATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCTATAATTTTTTGCCATAGGTTCTTTCTACGGCAGTCTCATGCAAAGAATGACCGAAGGACAATTGCGACAGTGTGTATGTTTCTCGCAGGAAAGGTCGAAGAAACCCCTCGCCCATTGAAGGATGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAGATTAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGAGTTGTTCTCGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCCTACAAACCCCTTGTCGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAGGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGATTGCCGCCTTCTGGCGAAGCTGATGGAAGCATTGGAGGTGGTCCCACTAATCAAACCCCTACAAAAGCTCCTACCAACAGCGAAGAACGTGCCGTAGCAGACAATCATGCACTTGGTGCAGGTATTGCTACTTCAAGACTTGGAACCTCAAAAGCTGGTTCATCTAGGCCAGCATCTGAACACTCATTTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGTATTGAAAGTTCGAGCGTAGATTTTAGAAGTCCTTCCAATCACAAAACAGGTAGTGAATCTAAGGTTAGACACGAGATGGAGCCATCGGCTTTCCATGACAAAGGAAACGCTCTAAACTCGGTAAAGCATCAGTCAGAGGGATTGGTTGAGCAAGACCATGGAAATGATATGAAAATAAATGAAGCAACAACAAGGGATGCAATGGAACTGAAAGACAAACATGTAATTCGAAATATAGATTTTAGAGAAGGTACACTTGGCAAATCTCAGGACGTTATCAAAAAAATTGATAAGGACAAAGTAAAGGCTGCGCTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGTTGGCAGTGAGAAAAACAAGCGAGAACAGAGGCAAAGTTGGAATAAGTCATCGAATAAACAAGAATATGAGGATTCATATCAAGACAAACATCGAGAGGACGATAAAGACGAGCATCCTCAACGAACGCGACAGTCATTATATAATCTAGATTCTAGCAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTAGGTTATGGGTATCAAGATTCCCCAAAGTCAAACAGTCGTAAGAGAGGCAGGGAACTCACAGGATAA 1509 42.68 MRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEADGSIGGGPTNQTPTKAPTNSEERAVADNHALGAGIATSRLGTSKAGSSRPASEHSFAGDQPSRAMQNHSIESSSVDFRSPSNHKTGSESKVRHEMEPSAFHDKGNALNSVKHQSEGLVEQDHGNDMKINEATTRDAMELKDKHVIRNIDFREGTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAVGSEKNKREQRQSWNKSSNKQEYEDSYQDKHREDDKDEHPQRTRQSLYNLDSSNIEEGEFANANEVGYGYQDSPKSNSRKRGRELTG 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32564920 32578262 - ClG42_02g0190400.10 Clacu02g1904 243972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1904 502 PIRSF Cyclin_L 1 501 - -
Clacu02g1904 502 Gene3D - 1 102 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 414 502 - -
Clacu02g1904 502 Pfam Cyclin-T2-like, C-terminal domain 107 194 - -
Clacu02g1904 502 SMART cyclin_7 109 194 IPR013763 -
Clacu02g1904 502 SMART cyclin_7 1 96 IPR013763 -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 247 289 - -
Clacu02g1904 502 FunFam Cyclin-T1-5 like 104 208 - -
Clacu02g1904 502 PANTHER CYCLIN 1 390 IPR043198 GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0008024(PANTHER)|GO:0016538(PANTHER)|GO:0016538(InterPro)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Clacu02g1904 502 SUPERFAMILY Cyclin-like 105 201 IPR036915 -
Clacu02g1904 502 Gene3D - 104 204 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 460 474 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 437 459 - -
Clacu02g1904 502 CDD CYCLIN_AcCycT_rpt1 1 101 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 211 228 - -
Clacu02g1904 502 Pfam Cyclin, N-terminal domain 2 103 IPR006671 -
Clacu02g1904 502 CDD CYCLIN_AcCycT_rpt2 105 197 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 200 229 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 246 301 - -
Clacu02g1904 502 MobiDBLite consensus disorder prediction 414 430 - -
Clacu02g1904 502 SUPERFAMILY Cyclin-like 2 104 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1904 K15188 - - csv:101220862 939.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0905 Clacu-Chr1:10613646 Clacu02g1904 Clacu-Chr2:32564920 4.10E-138 dispersed
Clacu02g1904 Clacu-Chr2:32564920 Clacu08g1643 Clacu-Chr8:26192407 2.30E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1084 . . . . . . . . . . . . . . . . Cpe16g00719 . . . . . . . Cla02g01816 Cam02g1922 Cec02g1943 Cco02g1987 Clacu02g1904 Cmu02g1851 Cre02g2165 . . . . . . . Cme11g01598 . . . . . . . Bma12g00594 . . . . . . . . Cpe05g01035 Bhi10g00960 Tan05g0605 . . Hepe08g0632 . . . . . . . . . . Csa06g01166 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81