Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g1910 | ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCCGATTATAACATCCAAAAGGAATCAACCCTTCACTTGGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATCAAGGAGCGGGTTGAGGAAAAAGAGGGTATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGTAAACAGCTTGGAGATGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTTGCCCTGAGGGGTGGTTATCTGGCTTGTATCACTGGCACAAAGTGTTTGGATGTCCTTCACCAGGGCATTATAATATTTATTTGA | 525 | 44.95 | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYLACITGTKCLDVLHQGIIIFI | 174 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 32642899 | 32646318 | + | ClG42_02g0191000.10 | Clacu02g1910 | 243978 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g1910 | 174 | SUPERFAMILY | Ubiquitin-like | 1 | 76 | IPR029071 | - | |
| Clacu02g1910 | 174 | FunFam | NEDD8 protein | 77 | 154 | - | - | |
| Clacu02g1910 | 174 | ProSitePatterns | Ubiquitin domain signature. | 103 | 128 | IPR019954 | - | |
| Clacu02g1910 | 174 | PANTHER | UBIQUITIN | 1 | 76 | IPR050158 | GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER) | |
| Clacu02g1910 | 174 | SUPERFAMILY | Ubiquitin-like | 79 | 152 | IPR029071 | - | |
| Clacu02g1910 | 174 | FunFam | Polyubiquitin 3 | 1 | 76 | - | - | |
| Clacu02g1910 | 174 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
| Clacu02g1910 | 174 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515(InterPro) | |
| Clacu02g1910 | 174 | SMART | ubq_7 | 77 | 148 | IPR000626 | GO:0005515(InterPro) | |
| Clacu02g1910 | 174 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515(InterPro) | |
| Clacu02g1910 | 174 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
| Clacu02g1910 | 174 | PRINTS | Ubiquitin signature | 11 | 31 | IPR019956 | - | |
| Clacu02g1910 | 174 | PRINTS | Ubiquitin signature | 53 | 74 | IPR019956 | - | |
| Clacu02g1910 | 174 | PRINTS | Ubiquitin signature | 32 | 52 | IPR019956 | - | |
| Clacu02g1910 | 174 | Pfam | Ubiquitin family | 79 | 149 | IPR000626 | GO:0005515(InterPro) | |
| Clacu02g1910 | 174 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515(InterPro) | |
| Clacu02g1910 | 174 | CDD | Ubl_NEDD8 | 79 | 152 | IPR038738 | - | |
| Clacu02g1910 | 174 | Gene3D | - | 1 | 77 | - | - | |
| Clacu02g1910 | 174 | Gene3D | - | 78 | 156 | - | - | |
| Clacu02g1910 | 174 | ProSiteProfiles | Ubiquitin domain profile. | 77 | 152 | IPR000626 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g0185 | Clacu-Chr2:1746358 | Clacu02g1910 | Clacu-Chr2:32642899 | 9.70E-10 | dispersed | |
| Clacu02g1910 | Clacu-Chr2:32642899 | Clacu10g0553 | Clacu-Chr10:6650493 | 8.70E-65 | dispersed | |
| Clacu02g1910 | Clacu-Chr2:32642899 | Clacu03g0489 | Clacu-Chr3:5204535 | 3.90E-65 | transposed | |
| Clacu02g1910 | Clacu-Chr2:32642899 | Clacu01g2292 | Clacu-Chr1:33885015 | 3.90E-65 | transposed | |
| Clacu02g1910 | Clacu-Chr2:32642899 | Clacu05g1630 | Clacu-Chr5:23853235 | 3.90E-65 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g1910 | K12158 | - | csv:101214716 | 293.893 |