Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1917 ATGGCTTTCTCATCCTCCCTCGCTCGATCTGCCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTGTCGCCGTCCGACTGCCGGAAGGCTTCATGCGTCGGGAGCTCTTTGAAGCTTCAATCTGGTGTTTTTGGAACTACTATCTCGAGTGGGGCGTCTTCTTTACAGTTAAGGTCATCTAAAGTTCGAACCGTCCAACCCATCAAAGCTACGGCCACGGAGGCGCCTCCGACGATCCAAAAAACTCCTAGCGGTGGGAAGACCAAGATAGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTGTTGCGAATTGCAACCTCCAGAGATGATATTGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATATGATTCTACTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAGTGATTCAACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTTAGCAAAAGGGACCCTGCAGATATCCCTTGGGGTGATTACGGGGCTGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTTCGAAAGAGAAGGCGTCAGCACACTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTTTCCAACGCAAGTTGTACAACCAATTGTCTTGCACCTCTTGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACCGTGCATGCAACAACAGCAACACAAAAGACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGTCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGCAAAGTACTGCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTCAAAAGACTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCGAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTGCCTCATTCGTGAAGCTGCAACCGAGTACTGGACCTTATCGAGCACATGGCAATGGTTTCAGCCTTCAACTAAATGTTAAACTTGTCATTGGCAAAGCCCCGAGTTCTTGTGATTTTGATCATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTTTGTCCCCCGAGAGCGTGGCTGCGGGAACAGATGGAATGGTAACGAAGGTGCCCTCGTGGCGACTCAATATGGACGAGTTCCGCTTGCCTACTGCAAACACGAGGTCTCATCATGGCATTGTTTATTACTGGAAGTCATGGAACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTCAATGAAGTTGACTCCTACAATGAACTGGGTATCGTGCCTGGAACTTTAACTGAGGATGAAAAGAAGCAAGAGGCGATCAGTGAGAGACGGGCAATATATGCATCCAACATAGCCAACATGTTGATCTTCATCGCTAAAGTTTATGCTTCAGTCGAAAGCAGATCATTAGCAGTTATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCGGGGTTCATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTACCGTTATCCTATCGGCAAGAATCGAATGCAACCAGTGGGAATTGTTGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTAGAGAACTTATTTCAAAGGTTCAACCGGATAGAGATCCAGATAGAGTAAAATGGATGGTTGGAATAATGGCATCCGTGACAGTAGTGAAATTTTGCCTTACAATATACTGTCGTAGATTCACAAATGAAATCATCAGAGCCTATGCCCAAGACCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCAAAGACCGTAATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGACTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATTGATACAGTGAGAGCGTATACCTTCGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACTTCTCTAAGTCAAGCACATGACATTGGAGAAACACTTCAAGATAAACTTGAACAGCTTGATGAGGTTGATCGAGCTTTCGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 2490 44.02 MAFSSSLARSAVSSSLIEASRSDLSPSDCRKASCVGSSLKLQSGVFGTTISSGASSLQLRSSKVRTVQPIKATATEAPPTIQKTPSGGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVLSDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTSKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKTASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSASFVKLQPSTGPYRAHGNGFSLQLNVKLVIGKAPSSCDFDHNPRTDSFRTELLSPESVAAGTDGMVTKVPSWRLNMDEFRLPTANTRSHHGIVYYWKSWNRQRKVAKYYERQESLLKGFNEVDSYNELGIVPGTLTEDEKKQEAISERRAIYASNIANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISKVQPDRDPDRVKWMVGIMASVTVVKFCLTIYCRRFTNEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32727894 32736566 + ClG42_02g0191700.10 Clacu02g1917 243985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1917 829 NCBIfam cation diffusion facilitator family transporter 539 815 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1917 829 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 91 389 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Clacu02g1917 829 SUPERFAMILY Cation efflux protein transmembrane domain-like 538 736 IPR027469 -
Clacu02g1917 829 Gene3D Cation efflux protein, cytoplasmic domain 741 816 IPR036837 -
Clacu02g1917 829 Gene3D Cation efflux protein transmembrane domain 538 734 IPR027469 -
Clacu02g1917 829 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 192 IPR020828 GO:0051287(InterPro)
Clacu02g1917 829 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 85 397 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 FunFam Metal tolerance protein 11 541 734 - -
Clacu02g1917 829 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 397 IPR020829 GO:0016620(InterPro)
Clacu02g1917 829 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620(InterPro)
Clacu02g1917 829 FunFam Metal tolerance protein 11 737 817 - -
Clacu02g1917 829 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 397 - -
Clacu02g1917 829 Pfam Dimerisation domain of Zinc Transporter 745 815 IPR027470 -
Clacu02g1917 829 Gene3D - 91 236 - -
Clacu02g1917 829 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 Pfam Cation efflux family 544 734 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1917 829 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287(InterPro)
Clacu02g1917 829 FunFam Glyceraldehyde-3-phosphate dehydrogenase 238 400 - -
Clacu02g1917 829 Gene3D Dihydrodipicolinate Reductase; domain 2 237 397 - -
Clacu02g1917 829 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 739 815 IPR036837 -
Clacu02g1917 829 FunFam Glyceraldehyde-3-phosphate dehydrogenase 90 248 - -
Clacu02g1917 829 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 255 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1917 K00134 - - csv:101216157 758.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1917 Clacu-Chr2:32727894 Clacu11g0831 Clacu-Chr11:8291546 1.30E-129 dispersed
Clacu02g1381 Clacu-Chr2:26993559 Clacu02g1917 Clacu-Chr2:32727894 1.60E-119 transposed
Clacu03g1442 Clacu-Chr3:27837062 Clacu02g1917 Clacu-Chr2:32727894 3.80E-95 transposed
Clacu02g1917 Clacu-Chr2:32727894 Clacu09g2294 Clacu-Chr9:37690954 2.40E-181 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40