Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1917 ATGGCTTTCTCATCCTCCCTCGCTCGATCTGCCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTGTCGCCGTCCGACTGCCGGAAGGCTTCATGCGTCGGGAGCTCTTTGAAGCTTCAATCTGGTGTTTTTGGAACTACTATCTCGAGTGGGGCGTCTTCTTTACAGTTAAGGTCATCTAAAGTTCGAACCGTCCAACCCATCAAAGCTACGGCCACGGAGGCGCCTCCGACGATCCAAAAAACTCCTAGCGGTGGGAAGACCAAGATAGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTGTTGCGAATTGCAACCTCCAGAGATGATATTGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATATGATTCTACTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAGTGATTCAACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTTAGCAAAAGGGACCCTGCAGATATCCCTTGGGGTGATTACGGGGCTGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTTCGAAAGAGAAGGCGTCAGCACACTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTTTCCAACGCAAGTTGTACAACCAATTGTCTTGCACCTCTTGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACCGTGCATGCAACAACAGCAACACAAAAGACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGTCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGCAAAGTACTGCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTCAAAAGACTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCGAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTGCCTCATTCGTGAAGCTGCAACCGAGTACTGGACCTTATCGAGCACATGGCAATGGTTTCAGCCTTCAACTAAATGTTAAACTTGTCATTGGCAAAGCCCCGAGTTCTTGTGATTTTGATCATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTTTGTCCCCCGAGAGCGTGGCTGCGGGAACAGATGGAATGGTAACGAAGGTGCCCTCGTGGCGACTCAATATGGACGAGTTCCGCTTGCCTACTGCAAACACGAGGTCTCATCATGGCATTGTTTATTACTGGAAGTCATGGAACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTCAATGAAGTTGACTCCTACAATGAACTGGGTATCGTGCCTGGAACTTTAACTGAGGATGAAAAGAAGCAAGAGGCGATCAGTGAGAGACGGGCAATATATGCATCCAACATAGCCAACATGTTGATCTTCATCGCTAAAGTTTATGCTTCAGTCGAAAGCAGATCATTAGCAGTTATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCGGGGTTCATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTACCGTTATCCTATCGGCAAGAATCGAATGCAACCAGTGGGAATTGTTGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTAGAGAACTTATTTCAAAGGTTCAACCGGATAGAGATCCAGATAGAGTAAAATGGATGGTTGGAATAATGGCATCCGTGACAGTAGTGAAATTTTGCCTTACAATATACTGTCGTAGATTCACAAATGAAATCATCAGAGCCTATGCCCAAGACCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCAAAGACCGTAATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGACTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATTGATACAGTGAGAGCGTATACCTTCGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACTTCTCTAAGTCAAGCACATGACATTGGAGAAACACTTCAAGATAAACTTGAACAGCTTGATGAGGTTGATCGAGCTTTCGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 2490 44.02 MAFSSSLARSAVSSSLIEASRSDLSPSDCRKASCVGSSLKLQSGVFGTTISSGASSLQLRSSKVRTVQPIKATATEAPPTIQKTPSGGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVLSDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTSKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKTASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSASFVKLQPSTGPYRAHGNGFSLQLNVKLVIGKAPSSCDFDHNPRTDSFRTELLSPESVAAGTDGMVTKVPSWRLNMDEFRLPTANTRSHHGIVYYWKSWNRQRKVAKYYERQESLLKGFNEVDSYNELGIVPGTLTEDEKKQEAISERRAIYASNIANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISKVQPDRDPDRVKWMVGIMASVTVVKFCLTIYCRRFTNEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32727894 32736566 + ClG42_02g0191700.10 Clacu02g1917 243985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1917 829 NCBIfam cation diffusion facilitator family transporter 539 815 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1917 829 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 91 389 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Clacu02g1917 829 SUPERFAMILY Cation efflux protein transmembrane domain-like 538 736 IPR027469 -
Clacu02g1917 829 Gene3D Cation efflux protein, cytoplasmic domain 741 816 IPR036837 -
Clacu02g1917 829 Gene3D Cation efflux protein transmembrane domain 538 734 IPR027469 -
Clacu02g1917 829 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 192 IPR020828 GO:0051287(InterPro)
Clacu02g1917 829 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 85 397 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 FunFam Metal tolerance protein 11 541 734 - -
Clacu02g1917 829 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 397 IPR020829 GO:0016620(InterPro)
Clacu02g1917 829 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620(InterPro)
Clacu02g1917 829 FunFam Metal tolerance protein 11 737 817 - -
Clacu02g1917 829 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 397 - -
Clacu02g1917 829 Pfam Dimerisation domain of Zinc Transporter 745 815 IPR027470 -
Clacu02g1917 829 Gene3D - 91 236 - -
Clacu02g1917 829 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620(InterPro)
Clacu02g1917 829 Pfam Cation efflux family 544 734 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1917 829 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287(InterPro)
Clacu02g1917 829 FunFam Glyceraldehyde-3-phosphate dehydrogenase 238 400 - -
Clacu02g1917 829 Gene3D Dihydrodipicolinate Reductase; domain 2 237 397 - -
Clacu02g1917 829 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 739 815 IPR036837 -
Clacu02g1917 829 FunFam Glyceraldehyde-3-phosphate dehydrogenase 90 248 - -
Clacu02g1917 829 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 255 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1917 Clacu-Chr2:32727894 Clacu11g0831 Clacu-Chr11:8291546 1.30E-129 dispersed
Clacu02g1381 Clacu-Chr2:26993559 Clacu02g1917 Clacu-Chr2:32727894 1.60E-119 transposed
Clacu03g1442 Clacu-Chr3:27837062 Clacu02g1917 Clacu-Chr2:32727894 3.80E-95 transposed
Clacu02g1917 Clacu-Chr2:32727894 Clacu09g2294 Clacu-Chr9:37690954 2.40E-181 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1917 K00134 - csv:101216157 758.444