Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1919 ATGCAGCACCTTCAATCCCGCCTACTAAAGTCTCTTTCTATTTCTTCTTCACCGGCCGCCTCCACAATCCAAGAAATTGCTTCTGCTTCCCCCAAAGGTTTGGCTAAGGTTGTGCTGAAAAAGGGGAAGGCACAGCTTTTTAAAGATGGGAGTCCAATGGTGTACAGTGGAGCTGTTGATAGAATTATTGGAAGGCCACCACCAAAAACTGGAGATGTTGTTCTGGTAGCCGATGGGACCGAAAAACCTATAGGTTGGGGTTTGTATAATTCAGTTTCTATGTTCTCTGTCAGATTGATGCAGTTGGAAGAAGAGGCAGCTAGAGACTCTTCTTGCACATTGAATATGGAGAAGATGATTGGAACAAGGATACATACTGCTAGAGAACTACGAAAGAACTTGGGACTTCCGTCGACCAGTACGAATGCTTATCGTCTTGTTAATAGTGAAGGAGATAGATTGTCAGGACTAATCATCGATGTCTTTGGAGATTTAGCAGTGGTAGCATCATCAGCTGCTTGGGTGGAGAAGTACAAAGCTGAAATAGAGGATTGTGTCCGTGGAATCGACGAAATCAATCATGTGAAATGGAGACCATCGGTGGACATTCTGAAAGAAGAAGGGATAGATGTGTCTGAATTGAAGGATACAAATCCGTCCATTTGTCCTGAAAGAACAAAGGTGACGGAGAATGAAATTTTTTATGCCATTTCACTTGAAGGCCAGAAAACAGGTTTTTATGCTGATCAGCGTGAAAATCGTCATTTTATCTCAACAATTTCGGAGGGTCAGAAGGTTCTTGATCTCTGCTGCTACAGTGGTGGGTTTTCTCTAAATGCAATACGTGGTGGAGCTATTAATGTCACGGGTATTGATTCATCATTGCCTGCTCTGGAGCTAGCAAAAGAAAATGTGATCCTTAATAGCATGGATCCGGAAAGAATATCATTTCTGAAAGCAGATGCCACTGCATTCATGAAGGATGCTCTATCTAGGAATGAATCTTGGGATATAGTCATTTTGGATCCTCCCAAACTAGCGCCACGGAAAAAGGTTCTGCAAACTGCATCAGGAATGTACAGGACTTTAAATTCATTAGCAATGCAACTCACAAGGAAAGGTGGTCTTCTCATGACTTGTTCGTGTTCTGGAGCAATGACACAAAGTGGGATGTTCTTGCAAATACTCCAGGGTGCAGCATCAATGGCCAAAAAGAAAATCACAGTTCTACGACAAGCAGGAGCGGCATGTGACCACCCGATCGACCCTACTTACCCAGAGGGTGCTTATCTTTCTAACATTCTTCTACGTGTGCTCTAA 1320 43.11 MQHLQSRLLKSLSISSSPAASTIQEIASASPKGLAKVVLKKGKAQLFKDGSPMVYSGAVDRIIGRPPPKTGDVVLVADGTEKPIGWGLYNSVSMFSVRLMQLEEEAARDSSCTLNMEKMIGTRIHTARELRKNLGLPSTSTNAYRLVNSEGDRLSGLIIDVFGDLAVVASSAAWVEKYKAEIEDCVRGIDEINHVKWRPSVDILKEEGIDVSELKDTNPSICPERTKVTENEIFYAISLEGQKTGFYADQRENRHFISTISEGQKVLDLCCYSGGFSLNAIRGGAINVTGIDSSLPALELAKENVILNSMDPERISFLKADATAFMKDALSRNESWDIVILDPPKLAPRKKVLQTASGMYRTLNSLAMQLTRKGGLLMTCSCSGAMTQSGMFLQILQGAASMAKKKITVLRQAGAACDHPIDPTYPEGAYLSNILLRVL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32741987 32746022 + ClG42_02g0191900.10 Clacu02g1919 243987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1919 439 Gene3D PUA domain 34 105 IPR036974 GO:0003723(InterPro)
Clacu02g1919 439 Pfam PUA-like domain 37 100 IPR041532 GO:0003723(InterPro)
Clacu02g1919 439 CDD RlmI_M_like 123 213 - -
Clacu02g1919 439 CDD AdoMet_MTases 265 380 - -
Clacu02g1919 439 Gene3D Vaccinia Virus protein VP39 226 439 IPR029063 -
Clacu02g1919 439 CDD PUA_RlmI 35 105 IPR041532 GO:0003723(InterPro)
Clacu02g1919 439 SMART pua_5 35 115 IPR002478 GO:0003723(InterPro)
Clacu02g1919 439 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 434 IPR029063 -
Clacu02g1919 439 Pfam S-adenosylmethionine-dependent methyltransferase 224 394 IPR019614 GO:0008168(InterPro)
Clacu02g1919 439 ProSiteProfiles PUA domain profile. 34 90 - -
Clacu02g1919 439 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 13 438 - -
Clacu02g1919 439 SUPERFAMILY PUA domain-like 36 104 IPR015947 -
Clacu02g1919 439 Gene3D RNA methyltransferase domain (HRMD) like 116 219 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1919 - - - 0.0