Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1921 ATGACTATGACGGTCGCTGCAAGAGCAATCGCTGCAGCTCGATCAATGGCGCGATCGAGCAGTTTCCCTCTAAAATCTCCATCTTCTTATGTGTTCGCTGCGCAGAAATCTCACTCCCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCGCTACTCGTCTTCACAGTTCTGGATTGTTACGAAGCCAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCACAATCCAGCTAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGCAAACCCTTAAAGGAAGCTGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTATTCTGAGGAAGCAAAACGGATATATGGTGACATAATTTCACCAACTATGGCCGATCGTCGAATTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTGTTACCCCTTGGAACTTTCCGTTGGCTATGATTACGCGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTAGCAGCAGCCGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTTGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGCGATGCTATACTCGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCTTGCATAGTATTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTGATTATGGCTTTGAAACAATCCTGCTCAACATGATTAATGTAATTAGCACTTACCATGATGCATCAATATCTACTTGTAAGTGCATACTACCTAGGGATGTGGGTCTATTCAACCACGACTCTTTCCTGCAATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGTATTAACAGATGTATACTTCAGTTCTGAAGGATGCTTCTTTTGCTCGTTTAAAAGATGGCTTACTGATATTGGAATCTACGAGAAATTTACAAATGCTTTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCCGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACTACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTATTGCTGACGTGAATAGTGACATGCTTGTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTACTGCAATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATACGGAATGGTTGGTGTTAATGAAGGCCTAATTTCTACAGAGAGAATGATAACTTGCTGTCCACCTTTCAAAAGAATGGACGGTGGAGCCTGCCTGGTCGCTAGAAGACCGTCTCATTCTCAGTTCCCAAGGAGAAAAGTGTCACCATATGAAACTTTGTCCCTCAAAGAAATTTGGCTTGCCCCCCTCGATGCTTGGCTGAGGAAGTTGGGGATGGTGGTGCTGGGGACCCAATGTCAAATTTCTCTTTTGAGGATCTTTAGGAGGCCAGGGCTTGTTCCTCCTTACCTGTCCAAGGTGGCTCCATTTGGTGGCGTTAAGGAGTCAGGCCTTGGAAGGGAAGGGTCGAAATATGGGATGGACGAGTATCTTGAGCTGAAATATGTTTGCTTGGGGAATATGGACCGCCATTGA 2085 45.32 MTMTVAARAIAAARSMARSSSFPLKSPSSYVFAAQKSHSHTLLIRQMSSEAQSIATRLHSSGLLRSQGLIGGKWIDAYDGKTIEVHNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLIAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFYSEEAKRIYGDIISPTMADRRILVLKQPVGVVGVVTPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIVFDDADVDVAVKGADYGFETILLNMINVISTYHDASISTCKCILPRDVGLFNHDSFLQLQQSSEIVDRLVFVPIEFLFKKVLTDVYFSSEGCFFCSFKRWLTDIGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVIADVNSDMLVSREEVFGPVAPLLQFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTERMITCCPPFKRMDGGACLVARRPSHSQFPRRKVSPYETLSLKEIWLAPLDAWLRKLGMVVLGTQCQISLLRIFRRPGLVPPYLSKVAPFGGVKESGLGREGSKYGMDEYLELKYVCLGNMDRH 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32756565 32767410 + ClG42_02g0192100.10 Clacu02g1921 243989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1921 694 FunFam Succinate-semialdehyde dehydrogenase I 80 337 - -
Clacu02g1921 694 CDD ALDH_F5_SSADH_GabD 85 688 - -
Clacu02g1921 694 Pfam Aldehyde dehydrogenase family 74 332 IPR015590 GO:0016491(InterPro)
Clacu02g1921 694 Pfam Aldehyde dehydrogenase family 405 572 IPR015590 GO:0016491(InterPro)
Clacu02g1921 694 Pfam Aldehyde dehydrogenase family 657 686 IPR015590 GO:0016491(InterPro)
Clacu02g1921 694 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 405 570 IPR016163 GO:0016620(InterPro)
Clacu02g1921 694 SUPERFAMILY ALDH-like 104 566 IPR016161 GO:0016491(InterPro)
Clacu02g1921 694 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 572 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Clacu02g1921 694 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491(InterPro)
Clacu02g1921 694 FunFam Succinate-semialdehyde dehydrogenase I 393 570 - -
Clacu02g1921 694 SUPERFAMILY ALDH-like 655 692 IPR016161 GO:0016491(InterPro)
Clacu02g1921 694 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 647 692 IPR016162 GO:0016491(InterPro)
Clacu02g1921 694 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 57 349 IPR016162 GO:0016491(InterPro)
Clacu02g1921 694 FunFam Aldehyde dehydrogenase, putative 658 684 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1921 Clacu-Chr2:32756565 Clacu06g1798 Clacu-Chr6:28471426 7.70E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1921 K17761 - rcu:8279668 626.32