Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1921 ATGACTATGACGGTCGCTGCAAGAGCAATCGCTGCAGCTCGATCAATGGCGCGATCGAGCAGTTTCCCTCTAAAATCTCCATCTTCTTATGTGTTCGCTGCGCAGAAATCTCACTCCCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCGCTACTCGTCTTCACAGTTCTGGATTGTTACGAAGCCAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCACAATCCAGCTAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGCAAACCCTTAAAGGAAGCTGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTATTCTGAGGAAGCAAAACGGATATATGGTGACATAATTTCACCAACTATGGCCGATCGTCGAATTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTGTTACCCCTTGGAACTTTCCGTTGGCTATGATTACGCGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTAGCAGCAGCCGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTTGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGCGATGCTATACTCGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCTTGCATAGTATTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTGATTATGGCTTTGAAACAATCCTGCTCAACATGATTAATGTAATTAGCACTTACCATGATGCATCAATATCTACTTGTAAGTGCATACTACCTAGGGATGTGGGTCTATTCAACCACGACTCTTTCCTGCAATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGTATTAACAGATGTATACTTCAGTTCTGAAGGATGCTTCTTTTGCTCGTTTAAAAGATGGCTTACTGATATTGGAATCTACGAGAAATTTACAAATGCTTTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCCGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACTACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTATTGCTGACGTGAATAGTGACATGCTTGTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTACTGCAATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATACGGAATGGTTGGTGTTAATGAAGGCCTAATTTCTACAGAGAGAATGATAACTTGCTGTCCACCTTTCAAAAGAATGGACGGTGGAGCCTGCCTGGTCGCTAGAAGACCGTCTCATTCTCAGTTCCCAAGGAGAAAAGTGTCACCATATGAAACTTTGTCCCTCAAAGAAATTTGGCTTGCCCCCCTCGATGCTTGGCTGAGGAAGTTGGGGATGGTGGTGCTGGGGACCCAATGTCAAATTTCTCTTTTGAGGATCTTTAGGAGGCCAGGGCTTGTTCCTCCTTACCTGTCCAAGGTGGCTCCATTTGGTGGCGTTAAGGAGTCAGGCCTTGGAAGGGAAGGGTCGAAATATGGGATGGACGAGTATCTTGAGCTGAAATATGTTTGCTTGGGGAATATGGACCGCCATTGA 2085 45.32 MTMTVAARAIAAARSMARSSSFPLKSPSSYVFAAQKSHSHTLLIRQMSSEAQSIATRLHSSGLLRSQGLIGGKWIDAYDGKTIEVHNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLIAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFYSEEAKRIYGDIISPTMADRRILVLKQPVGVVGVVTPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIVFDDADVDVAVKGADYGFETILLNMINVISTYHDASISTCKCILPRDVGLFNHDSFLQLQQSSEIVDRLVFVPIEFLFKKVLTDVYFSSEGCFFCSFKRWLTDIGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVIADVNSDMLVSREEVFGPVAPLLQFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTERMITCCPPFKRMDGGACLVARRPSHSQFPRRKVSPYETLSLKEIWLAPLDAWLRKLGMVVLGTQCQISLLRIFRRPGLVPPYLSKVAPFGGVKESGLGREGSKYGMDEYLELKYVCLGNMDRH 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32756565 32767410 + ClG42_02g0192100.10 Clacu02g1921 243989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1921 694 FunFam Succinate-semialdehyde dehydrogenase I 80 337 - -
Clacu02g1921 694 CDD ALDH_F5_SSADH_GabD 85 688 - -
Clacu02g1921 694 Pfam Aldehyde dehydrogenase family 74 332 IPR015590 GO:0016491(InterPro)
Clacu02g1921 694 Pfam Aldehyde dehydrogenase family 405 572 IPR015590 GO:0016491(InterPro)
Clacu02g1921 694 Pfam Aldehyde dehydrogenase family 657 686 IPR015590 GO:0016491(InterPro)
Clacu02g1921 694 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 405 570 IPR016163 GO:0016620(InterPro)
Clacu02g1921 694 SUPERFAMILY ALDH-like 104 566 IPR016161 GO:0016491(InterPro)
Clacu02g1921 694 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 572 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Clacu02g1921 694 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491(InterPro)
Clacu02g1921 694 FunFam Succinate-semialdehyde dehydrogenase I 393 570 - -
Clacu02g1921 694 SUPERFAMILY ALDH-like 655 692 IPR016161 GO:0016491(InterPro)
Clacu02g1921 694 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 647 692 IPR016162 GO:0016491(InterPro)
Clacu02g1921 694 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 57 349 IPR016162 GO:0016491(InterPro)
Clacu02g1921 694 FunFam Aldehyde dehydrogenase, putative 658 684 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1921 K17761 - - rcu:8279668 626.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1921 Clacu-Chr2:32756565 Clacu06g1798 Clacu-Chr6:28471426 7.70E-72 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu06g1094 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 6.1e-212 733.8
Clacu02g1708 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Clacu06g1798 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.2e-153 539.3
Clacu06g1798 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.1e-250 861.7
Clacu02g1708 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 8.2e-247 849.7
Clacu06g1094 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.8 3.1e-161 565.5
Clacu02g1708 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 6.1e-170 594.0
Clacu06g1798 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 5.9e-165 577.4
Clacu06g1094 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Clacu11g1761 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.6 1.6e-181 632.9
Clacu11g1762 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 5.2e-177 617.8
Clacu11g1762 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 2.7e-176 615.1
Clacu11g1761 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 3.5e-176 614.8
Clacu02g2374 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.6e-117 419.9
Clacu07g0896 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 6.8e-184 640.6
Clacu02g2374 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Clacu02g1921 . 37 694 Aldehyde Dehydrogenase Gene Family AT1G79440 57.4 1.1e-203 706.4
Clacu09g1690 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.5 4.8e-240 827.4
Clacu01g1896 . 285 719 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.3e-181 632.5
Clacu06g1775 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.8 7.8e-252 866.3
Clacu06g1775 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 1.1e-253 872.5
Clacu02g1749 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.1e-269 922.9
Clacu01g1519 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.0 7.9e-261 896.3
Clacu06g0444 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.1e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42