Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g1922 | ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAATTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCACCGCCTCCACCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCATCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACAGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA | 1080 | 50.65 | MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWHLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPQRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 32774216 | 32781475 | + | ClG42_02g0192200.10 | Clacu02g1922 | 243990 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g1922 | 359 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Clacu02g1922 | 359 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Clacu02g1922 | 359 | MobiDBLite | consensus disorder prediction | 330 | 359 | - | - | |
Clacu02g1922 | 359 | FunFam | Myb family transcription factor | 32 | 90 | - | - | |
Clacu02g1922 | 359 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
Clacu02g1922 | 359 | Pfam | Myb-like DNA-binding domain | 35 | 85 | IPR001005 | - | |
Clacu02g1922 | 359 | MobiDBLite | consensus disorder prediction | 314 | 329 | - | - | |
Clacu02g1922 | 359 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677(InterPro) | |
Clacu02g1922 | 359 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 205 | IPR046955 | GO:0003700(InterPro) | |
Clacu02g1922 | 359 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Clacu02g1922 | 359 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - | |
Clacu02g1922 | 359 | MobiDBLite | consensus disorder prediction | 292 | 359 | - | - | |
Clacu02g1922 | 359 | Gene3D | - | 32 | 90 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1922 | Clacu-Chr2:32774216 | Clacu11g1835 | Clacu-Chr11:29499845 | 1.70E-14 | dispersed | |
Clacu03g0971 | Clacu-Chr3:14582077 | Clacu02g1922 | Clacu-Chr2:32774216 | 9.20E-18 | transposed | |
Clacu04g0235 | Clacu-Chr4:7362907 | Clacu02g1922 | Clacu-Chr2:32774216 | 5.60E-19 | transposed | |
Clacu05g0372 | Clacu-Chr5:3194446 | Clacu02g1922 | Clacu-Chr2:32774216 | 1.50E-39 | transposed | |
Clacu07g0122 | Clacu-Chr7:1652691 | Clacu02g1922 | Clacu-Chr2:32774216 | 1.30E-21 | transposed | |
Clacu07g0217 | Clacu-Chr7:2546176 | Clacu02g1922 | Clacu-Chr2:32774216 | 2.20E-32 | transposed | |
Clacu10g1258 | Clacu-Chr10:25438927 | Clacu02g1922 | Clacu-Chr2:32774216 | 7.80E-15 | transposed | |
Clacu10g1325 | Clacu-Chr10:26219895 | Clacu02g1922 | Clacu-Chr2:32774216 | 9.30E-35 | transposed | |
Clacu10g1675 | Clacu-Chr10:30103845 | Clacu02g1922 | Clacu-Chr2:32774216 | 5.80E-25 | transposed | |
Clacu11g1134 | Clacu-Chr11:15909002 | Clacu02g1922 | Clacu-Chr2:32774216 | 7.60E-29 | transposed | |
Clacu02g1922 | Clacu-Chr2:32774216 | Clacu09g2308 | Clacu-Chr9:37762287 | 2.30E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47306 | PF00249 | Myb_DNA-binding | 1.90E-06 | CL0123 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g1922 | - | - | - | 0.0 |