Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1922 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAATTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCACCGCCTCCACCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCATCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACAGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA 1080 50.65 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWHLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPQRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32774216 32781475 + ClG42_02g0192200.10 Clacu02g1922 243990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1922 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Clacu02g1922 359 MobiDBLite consensus disorder prediction 1 26 - -
Clacu02g1922 359 MobiDBLite consensus disorder prediction 330 359 - -
Clacu02g1922 359 FunFam Myb family transcription factor 32 90 - -
Clacu02g1922 359 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Clacu02g1922 359 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Clacu02g1922 359 MobiDBLite consensus disorder prediction 314 329 - -
Clacu02g1922 359 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Clacu02g1922 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 205 IPR046955 GO:0003700(InterPro)
Clacu02g1922 359 MobiDBLite consensus disorder prediction 1 17 - -
Clacu02g1922 359 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Clacu02g1922 359 MobiDBLite consensus disorder prediction 292 359 - -
Clacu02g1922 359 Gene3D - 32 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1922 Clacu-Chr2:32774216 Clacu11g1835 Clacu-Chr11:29499845 1.70E-14 dispersed
Clacu03g0971 Clacu-Chr3:14582077 Clacu02g1922 Clacu-Chr2:32774216 9.20E-18 transposed
Clacu04g0235 Clacu-Chr4:7362907 Clacu02g1922 Clacu-Chr2:32774216 5.60E-19 transposed
Clacu05g0372 Clacu-Chr5:3194446 Clacu02g1922 Clacu-Chr2:32774216 1.50E-39 transposed
Clacu07g0122 Clacu-Chr7:1652691 Clacu02g1922 Clacu-Chr2:32774216 1.30E-21 transposed
Clacu07g0217 Clacu-Chr7:2546176 Clacu02g1922 Clacu-Chr2:32774216 2.20E-32 transposed
Clacu10g1258 Clacu-Chr10:25438927 Clacu02g1922 Clacu-Chr2:32774216 7.80E-15 transposed
Clacu10g1325 Clacu-Chr10:26219895 Clacu02g1922 Clacu-Chr2:32774216 9.30E-35 transposed
Clacu10g1675 Clacu-Chr10:30103845 Clacu02g1922 Clacu-Chr2:32774216 5.80E-25 transposed
Clacu11g1134 Clacu-Chr11:15909002 Clacu02g1922 Clacu-Chr2:32774216 7.60E-29 transposed
Clacu02g1922 Clacu-Chr2:32774216 Clacu09g2308 Clacu-Chr9:37762287 2.30E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47306 PF00249 Myb_DNA-binding 1.90E-06 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1922 - - - 0.0