Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1928 ATGACCCAATCGCCGGTGCCTCCGTCGTTGGCTCCGCCGCAGCCACCGCCATTATACGGCTCCGGAGTTCAGGTCCGTTGCGCCGGCTGTCGTGATGTTTTGGTAGTGGCGCCTGGCCACACCGAGTTCTTCTGCCCATCTTGTCAATTACCTCAGATGTTGCCTCCTGAGCTTTTAGTTAGGGCCCACTCCAAGCCCCTTCCTCCTCCTCCGCTACCGCCGCCACCGCCGTCGCTTCCGCCGTCGATGCCCCTTCCCCCTCCTTTGTCCATACACCATGTACCTGCTCATGGCATTGATCCTACCAAGATGCAGCTCCCCTGTGCTAATTGCAAGGCGCTTCTTAATGTTCCTCATGGTTTAACTAGGTTCGTTTGTCCTCAGTGCGCGGTTGACCTCGCTGTCGATGTCTCCAAGCTCCATCAGTTCTTTCCCTCCCGGCCGCCTCCTGAGGAAGTCAACGAGGTAGCCATTGAAGTGGAAAGAGAAGAAGATGAAGGTGGTACAGTGGGAGAGACATTTACAGAATATCACCCTCCCAAGCTATCCATAGGACCACCTCACCCGGACCCAGTTGTGGAAACATCCTCCTTATCTGCTGTCCAGCCTCCTGAACCTACTTATGATTTAAAAATCAAGGATGATTTAGAAAAGTCAAAAGCTCTTTCATGCTTACAAATTGAGACCTTGGTATATGCTTCTCAGAGACATATGCACCATCTCCCAAATGAGACCAGGGCGGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGGACCATTGCAGGTTTATTGTGGGAAAATTGGCACCATGGGAGGAGGAAAGCATTGTGGATTTCGGTTGGCTCAGATTTGAAGTATGATGCTAGGAGAGACTTAGATGATGTAGGTGCAACGTGCATTAAAGTGCATGCTTTGAACAAGCTACCTTATTCAAAGCTTGACTCAAAGTCTGTGGGTATTAGAGAAGGAGTTGTCTTTTTGACATATAGCAGCCTCATAGCATCCTCCGAACGAGGCCGTTCTCGCCTGCAGCAGCTTGTTCAGTGGTGTGGAACAGGATTTGATGGTCTCATCATATTTGATGAGTGCCATAAAGCCAAAAATTTGGTACCAGAAGCTGGAAGCCAGCCAACTAGGACAGGAGAAGCCGTTCTAGAGCTGCAGGATCGACTTCCTGAAGCTCGTATAATTTACTGCTCAGCCACCGGTGCATCTGAGCCACGCAATATGGGCTATATGGTCCGACTCGGGCTTTGGGGAACTGGAACTTCCTTTATTGACTTCAGGGATTTTTTAGGTGCATTGGAGCGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTGTGTCGCACATTGAGCTACCGAGGAGCTGAATTTGAGATCGTGGAAGCACCACTAGAAGCTGAGATGATGGAAATGTATACATTAGCAGCTGAATTTTGGGCGAAGTTGCGGGTAGAATTGATGACAGCAAGTGCGTATGTTACTAGTGACAAGCCTAGCACCAACCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATATGTGTATGTCTGCCAAGGTTCCTGCTACTGTGAGACTAGCTAAGCAAGCATTATTGGAAGATAAATGTGTTGTCATTGGCTTGCAAAGTACTGGAGAGGCACGCACTGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGCTTAAATTTGTGGAAGAAAATTACCCTTTGCCTGAAAAGCCTGAAGCTCTACCTGAGGAGGGAAGTGTCAAGGAACTTCAAAGGAAGAGACACTCGGCAACTCCTGGCATATCACTAAATGGGAGGGTAAGGAAAGCTGCAAAGTGGAAACCTCCAAGTGATGTCGAAAGTGACGAAGAATCTGAAATTGATTCTGCTCCCGAATCTACCGAATCAGATGATGAGTTTCAGATTTGTGAGATTTGCAATACTGAAGAGGAAAGGAAAAAGTTACTTCGATGTTCCTGTTGTGAGCAACTTTTTCATCCTGCATGTCTCGACCCTCCTCTCTTGGATACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAGGAAAAGACCGATGAGTATCTTAAAGAAAGAAAAGCTGTTATAGCTGAACTTTTGAAAAGGTATGATGCTGCTTCGGATCGTAAGTCTAATTTGTTGGCAATTATTCGTTCATTGAATCTTCCAAACAATCCTTTGGATGATATTATCGATCAGCTTGGTGGCCCTGATAAGGTAGCGGAAATAACTGGAAGAAGGGGAATGCTTGTAAGGGCCCCCAACGGAAAGGGTGTTACTTACCAGCCACGAAACTCGAAGGATGTGACTATGGAGATGGTCAACATGCATGAGAAACAACTGTTTATGGATGGTAAGAAGTTTGTTGCTATCATTTCTGAAGCTGGATCAGCTGGTGTTTCACTGCAGGCCGACAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCTGATCGAGCCATTCAACAATTTGGACGGACTCATCGCTCTAATCAAGCTTCAGCACCCGAATACAGGCTGCTTTTCACAAATCTCGGTGGAGAACGCAGGGCTGGGTTGTCACTCAGTGCATATAATTATGACAGTGCTTATGGGAAAACGGCCTTGACGATGATGTACAGAGGAATAATGGAGCAGGATGCCTTGCCCGTTGAACCTCCTGGTTGCTCATCTGAGAAACCTGATTCAATCCGTGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATTAGGGACACCGTACTTGCGTCTGGGAAGGACTTTGGAAAGACCTCTGGTCGTATTGTTGAGTCAGACATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTCCCGCCTGAGATTCAAAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTTCTAATTCAGAAAGCACGCATTGAAGGGAATCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTATTGAATTAAGAGGAAGTCCAAAGACAGTTCATGTTGATCCTGTCTCTGGGGCATCGACTATGCTGTTTACTTTCTCTTTGGATCGTGGTATAACTTGGGAGTCTGCGAGCACCATTCTTGATGAGAAGCAAAAGGATGGGCTTGGTTCAACCAATGATGGGTTCTATGAATCCAGGAGGGACTGGTTGGGAAGATGCCACATCATATTAGCCTTTGAAAGTTCTGTTCCTGGAATGTATAAAATTGTCCGCCCAGCTGTTGGGGAGTCACTAAGGGAAATGCCTCTCTCTGAGTTACGAAACAAATATCGAAAAACATCATCTTTAGAGAAGGCTCGTAATGGGTGGGAAGATGAGTATGATATTTCCTCAAAACAGTGCATGCACGGACCAAAGTGTAAGCTTGGCAACTTTTGTACGGTTGGCAGGAGAATACAGGAAGTTAATGTTTTGGGTGGCCTTATTCTTCCTGTTTGGGGAACTATTGAAAATGCCCTTTCTAAGCAGGCCCGCCAAAGTCATCAGCGGCTTCGTGTAGTACGTATAGAAACCACAACAGATAAACAGAGAATAGTTGGGCTGTTTGTTCCAAATGCAGCTGTTGAATCAGTGCTTCAAGGTTTAGCCTGGGTACAAGATGTAGATGCTTGA 3738 45.96 MTQSPVPPSLAPPQPPPLYGSGVQVRCAGCRDVLVVAPGHTEFFCPSCQLPQMLPPELLVRAHSKPLPPPPLPPPPPSLPPSMPLPPPLSIHHVPAHGIDPTKMQLPCANCKALLNVPHGLTRFVCPQCAVDLAVDVSKLHQFFPSRPPPEEVNEVAIEVEREEDEGGTVGETFTEYHPPKLSIGPPHPDPVVETSSLSAVQPPEPTYDLKIKDDLEKSKALSCLQIETLVYASQRHMHHLPNETRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRKALWISVGSDLKYDARRDLDDVGATCIKVHALNKLPYSKLDSKSVGIREGVVFLTYSSLIASSERGRSRLQQLVQWCGTGFDGLIIFDECHKAKNLVPEAGSQPTRTGEAVLELQDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFEIVEAPLEAEMMEMYTLAAEFWAKLRVELMTASAYVTSDKPSTNQLWRLFWASHQRFFRHMCMSAKVPATVRLAKQALLEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEENYPLPEKPEALPEEGSVKELQRKRHSATPGISLNGRVRKAAKWKPPSDVESDEESEIDSAPESTESDDEFQICEICNTEEERKKLLRCSCCEQLFHPACLDPPLLDTETAEWSCQSCKEKTDEYLKERKAVIAELLKRYDAASDRKSNLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRAPNGKGVTYQPRNSKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRAGLSLSAYNYDSAYGKTALTMMYRGIMEQDALPVEPPGCSSEKPDSIRDFIENAKAALNSVGIIRDTVLASGKDFGKTSGRIVESDMNDIGRFLNRLLGLPPEIQNRIFELFVSILDLLIQKARIEGNLDSGIVDMRANVIELRGSPKTVHVDPVSGASTMLFTFSLDRGITWESASTILDEKQKDGLGSTNDGFYESRRDWLGRCHIILAFESSVPGMYKIVRPAVGESLREMPLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLQGLAWVQDVDA 1245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32825758 32857922 + ClG42_02g0192800.10 Clacu02g1928 243996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1928 1245 Pfam C-terminal domain on Strawberry notch homologue 891 1024 IPR026937 -
Clacu02g1928 1245 Pfam C-terminal domain on Strawberry notch homologue 756 889 IPR026937 -
Clacu02g1928 1245 MobiDBLite consensus disorder prediction 600 620 - -
Clacu02g1928 1245 MobiDBLite consensus disorder prediction 62 83 - -
Clacu02g1928 1245 Pfam PHD-finger 668 712 IPR019787 -
Clacu02g1928 1245 MobiDBLite consensus disorder prediction 632 661 - -
Clacu02g1928 1245 FunFam Protein strawberry notch homolog 2 218 418 - -
Clacu02g1928 1245 ProSiteProfiles Zinc finger PHD-type profile. 665 715 IPR019787 -
Clacu02g1928 1245 MobiDBLite consensus disorder prediction 646 661 - -
Clacu02g1928 1245 Pfam P-loop containing NTP hydrolase pore-1 187 486 IPR039187 -
Clacu02g1928 1245 ProSitePatterns Zinc finger PHD-type signature. 668 712 IPR019786 -
Clacu02g1928 1245 SMART PHD_3 667 713 IPR001965 -
Clacu02g1928 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 430 IPR027417 -
Clacu02g1928 1245 PANTHER STRAWBERRY NOTCH-RELATED 33 1242 IPR026741 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0031490(PANTHER)|GO:0042393(PANTHER)
Clacu02g1928 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 726 IPR013083 -
Clacu02g1928 1245 Gene3D - 217 417 IPR027417 -
Clacu02g1928 1245 SUPERFAMILY FYVE/PHD zinc finger 657 718 IPR011011 -
Clacu02g1928 1245 MobiDBLite consensus disorder prediction 61 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1928 K26273 - - csv:101218295 2298.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1181 . . . . Bpe07g00481 . . . . . . . . . . . . . . . . . . . Cla02g01841 Cam02g1947 Cec02g1974 Cco02g2013 Clacu02g1928 Cmu02g1877 Cre02g2189 . . . . . . . Cme11g01655 . . . . . . . Bma12g00561 . . . . . . . . Cpe05g01023 Bhi10g00921 . . . . . . . . . . . . . . Csa06g01139 Chy11g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008454 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47308 PF13872 AAA_34 6.40E-133 CL0023 Clacu TR