Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g1934 | ATGAAGCTCCGACCAGATTTTCTTCGACCCATAATCGCCTATGTAGTCCCAAAACCTCCATGGTTCCATTTATTTCATTCGCCCACTGACCCAATCGCCACTTCCAATGAGGTCTCCACCATAATCGAAACTATTGATCCTTTCGAAGATGGATTGGAAGTCATATCGCCCCATATTTCGTCTGATGTAATTACCTCCGTCATTGAAGATCAATCGAATCCCCGACTTGGATTTCGACTTTTTATCTGGTCGTTAAGGAGAAAGAGTCTCTGCTGCAATGCCTCGCAGAATTTTATCATCGACAGGTTAGTAAAGGACAATGCCTTCGAATTATATTGGAAAACTCTTCAAGAGCTTAAGGATTCAGCAATTGAAATTCCATCGGATGCTTTCTCTGTGTTGATTGAGGCATACTCAAAAGCGGGCATGGATGAGAAGGCCGTTGAATCATTTGGTCTGATGCGGGATTTTGACTGTAAGCCCAACATTTTTGCTTTCAATTTGATTTTGCATGTTTTGGTGCGAAAAGAAGCATTTTTGTTAGCTTTAGCAGTGTATAATCAGATGCTGAAATGTAATTTGAATCCGAATGTGGTTACCTACAGCATATTGATTCATGGATTCTGTAAATCTAGTAAAACTCAAGATGCCCTTGTACTTTTTGATGAAATGACCTATAGAGGAATATTGCCCAACGAGATAACTTATTCGATTGTTCTTTCTGGACTGTGTCAAGCTAAGAAAATTGATGATGCCCAGAGATTGTTCAGTAAGATGAGAGCGATTGGGTGTAGTCCAGATGTAATAACTTATAATGTTTTGCTTAATGGATTTTGTAAGTTAGGTTATTTGGATGAAGCTTTTTCATTGTTGCAATCATTTGAAAAGGATGGCCATATTCTTGGAGTTAATGGGTATAGTTGTTTGATTAATGGCTTGTTTAGGGCTAGGAGATATGACGAAGCACATATGTGGTACCAGAAAATGTTGAGGGAAAACATCAAGCCCGATGTTATCTTGTATACTATTATGATCCAAGGTTTATCACAAGAAGGTCGGGTTACTGATGCATTGGCACTGTTGGATGAGATGACAGAAAGAGGGCTTAGTCCAGATACTGCTTGTTACAATGCTTTAATTAAAGGGTTTTGTGATATGGGTCATTTGGATAAGGCTCAGTCCCTTCGACTTGAGATTTCAAAGCACGACTGTTTCCCTGATAATCACACATACTCCATTCTCATTTGTGGTATGTGCAAGAATGGGCTAATAAGTGAGGCACAACATATATTTAATGAAATGGAGAAGCTTGGATGCGTTCCTTCTATAGTGACCTTCAATTCTCTCATTGATGGACTTTGCAAAGCTGGTAAGCTTCAGGAAGCTTACCTATTATTTTACAAAATGGAGATAGGAAGAAAACCTTCTTTGTTTCTTCGGCTTTCTCAGGGCGCCAATAAGGTTCTTGACAATGCCAGTCTCCAAGTTATGATCCAGCAATTATGTGAGTCAGGATTGATTCTTAAGGCCTACAAGCTTCTTATGCAGCTAGTTGAGAGTGGGGTTTTGCCAGATATTAGGACTTATAACATCCTAATCAATGGATTATGCAAGAATAACAATATTAATGGTGGTTTTAAGCTCTTCAAGGCCATGCAGCTCAAAGGACGCTTGCCAGATTCGGTTACATACGGGACTCTAATAGATGGGCTCTATAGAGTTGGTAGGGATGAGGATGCACTAGGAATTTTTGAACAAATGGTAAAGAATGGGTGCAAGCCTGATTCTTCTATTTACAAGTCCATCATGACTTGGTCGTGTCGAAAAAAGAAGGTTTCACTAGCTTTTAGTGTTTGGATGAAGTATCTGAGGAATTTTCGTGGCTGGGAAGATGAAAAGGTAGCAGTAGTAGCGGAAAGTTTCAATAAAGGAGAGCTTGAGACAACAATTCAGAGATTAATTGAAATGGACATGATATCAAAAGATTTCGACTTAGCTCCATACACCATTTTTCTCATTGGATTGTGTCAAGCCGAGAGGGTTTCCGAAGCCTTTGCTATATTTTCTGTTCTCAAGGACTTCAAGATGAATGTAAGTTCAGCGAGCTGTGTGATGTTGATTGGCAGGTTGTGCATGGAAGGAGAACTTGACCTAGCCGTGGATGTTTTTCTTTATACACTAGAAGAAGGCTTTATGTTGATGCCTCGAATTTGCAATCAGCTGCTGAGCCGCCTTCTTCATTTGGAGGACAGAAAAGACCATGCTCTTGTTCTTATACATAGAATGGAGGCTTTTGGATATGATATGAATACTCTTCTCCACGACAGTACTAAGTTACTTCTTCATGATCATTGGGAATCATTGCAAGCTAAAGCTTTCATGCCTAAATACACGCGGCTGTCGCCAACTCACAACAAAGAATTGCCAAAATAA | 2433 | 39.7 | MKLRPDFLRPIIAYVVPKPPWFHLFHSPTDPIATSNEVSTIIETIDPFEDGLEVISPHISSDVITSVIEDQSNPRLGFRLFIWSLRRKSLCCNASQNFIIDRLVKDNAFELYWKTLQELKDSAIEIPSDAFSVLIEAYSKAGMDEKAVESFGLMRDFDCKPNIFAFNLILHVLVRKEAFLLALAVYNQMLKCNLNPNVVTYSILIHGFCKSSKTQDALVLFDEMTYRGILPNEITYSIVLSGLCQAKKIDDAQRLFSKMRAIGCSPDVITYNVLLNGFCKLGYLDEAFSLLQSFEKDGHILGVNGYSCLINGLFRARRYDEAHMWYQKMLRENIKPDVILYTIMIQGLSQEGRVTDALALLDEMTERGLSPDTACYNALIKGFCDMGHLDKAQSLRLEISKHDCFPDNHTYSILICGMCKNGLISEAQHIFNEMEKLGCVPSIVTFNSLIDGLCKAGKLQEAYLLFYKMEIGRKPSLFLRLSQGANKVLDNASLQVMIQQLCESGLILKAYKLLMQLVESGVLPDIRTYNILINGLCKNNNINGGFKLFKAMQLKGRLPDSVTYGTLIDGLYRVGRDEDALGIFEQMVKNGCKPDSSIYKSIMTWSCRKKKVSLAFSVWMKYLRNFRGWEDEKVAVVAESFNKGELETTIQRLIEMDMISKDFDLAPYTIFLIGLCQAERVSEAFAIFSVLKDFKMNVSSASCVMLIGRLCMEGELDLAVDVFLYTLEEGFMLMPRICNQLLSRLLHLEDRKDHALVLIHRMEAFGYDMNTLLHDSTKLLLHDHWESLQAKAFMPKYTRLSPTHNKELPK | 810 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 32898783 | 32901215 | - | ClG42_02g0193400.10 | Clacu02g1934 | 244002 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g1934 | 810 | PANTHER | RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED | 69 | 470 | - | GO:0003729(PANTHER) | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 269 | 299 | IPR002885 | - | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 234 | 268 | IPR002885 | - | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 444 | 470 | IPR002885 | - | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 409 | 442 | IPR002885 | - | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 340 | 373 | IPR002885 | - | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 562 | 596 | IPR002885 | - | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 199 | 233 | IPR002885 | - | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 306 | 338 | IPR002885 | - | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 375 | 407 | IPR002885 | - | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 528 | 560 | IPR002885 | - | |
| Clacu02g1934 | 810 | NCBIfam | pentatricopeptide repeat | 130 | 163 | IPR002885 | - | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 197 | 231 | IPR002885 | - | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 372 | 406 | IPR002885 | - | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 442 | 476 | IPR002885 | - | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 337 | 371 | IPR002885 | - | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 162 | 196 | IPR002885 | - | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 490 | 524 | IPR002885 | - | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 302 | 336 | IPR002885 | - | |
| Clacu02g1934 | 810 | Gene3D | Tetratricopeptide repeat domain | 400 | 472 | IPR011990 | GO:0005515(InterPro) | |
| Clacu02g1934 | 810 | Gene3D | Tetratricopeptide repeat domain | 306 | 399 | IPR011990 | GO:0005515(InterPro) | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 267 | 301 | IPR002885 | - | |
| Clacu02g1934 | 810 | Pfam | PPR repeat | 130 | 159 | IPR002885 | - | |
| Clacu02g1934 | 810 | Pfam | PPR repeat | 496 | 522 | IPR002885 | - | |
| Clacu02g1934 | 810 | Pfam | PPR repeat | 668 | 693 | IPR002885 | - | |
| Clacu02g1934 | 810 | Pfam | PPR repeat | 306 | 334 | IPR002885 | - | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 525 | 559 | IPR002885 | - | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 560 | 594 | IPR002885 | - | |
| Clacu02g1934 | 810 | Gene3D | Tetratricopeptide repeat domain | 646 | 796 | IPR011990 | GO:0005515(InterPro) | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 407 | 441 | IPR002885 | - | |
| Clacu02g1934 | 810 | Pfam | PPR repeat family | 336 | 385 | IPR002885 | - | |
| Clacu02g1934 | 810 | Pfam | PPR repeat family | 161 | 210 | IPR002885 | - | |
| Clacu02g1934 | 810 | Pfam | PPR repeat family | 413 | 455 | IPR002885 | - | |
| Clacu02g1934 | 810 | Pfam | PPR repeat family | 238 | 280 | IPR002885 | - | |
| Clacu02g1934 | 810 | Pfam | PPR repeat family | 524 | 572 | IPR002885 | - | |
| Clacu02g1934 | 810 | SUPERFAMILY | HCP-like | 242 | 374 | - | - | |
| Clacu02g1934 | 810 | Gene3D | Tetratricopeptide repeat domain | 61 | 175 | IPR011990 | GO:0005515(InterPro) | |
| Clacu02g1934 | 810 | Gene3D | Tetratricopeptide repeat domain | 176 | 301 | IPR011990 | GO:0005515(InterPro) | |
| Clacu02g1934 | 810 | Gene3D | Tetratricopeptide repeat domain | 473 | 623 | IPR011990 | GO:0005515(InterPro) | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 127 | 161 | IPR002885 | - | |
| Clacu02g1934 | 810 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 232 | 266 | IPR002885 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g1934 | - | - | - | 0.0 |