Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1944 ATGAAGTTCTGTTCAGCATCAGTGTTTCCTCTGTTTTTTGTTATTATTAATCTACTTCACCTTACCATTGCTGACCTGGAATCAGACAAGCAAGCTCTTCTTGAATTTGCATCTTCTGTTCCACATCGTCGGAGCCTCAACTGGAACGATACTACATCAGTATGCACATCTTGGGTTGGCATTACTTGCAGTGCAGATGGAACTCATGTGCTTACCCTTCGATTACCTGGCATTGGACTCGTGGGTTCAATTCCTCCTAACACTCTCGGGAAACTTGATGGCCTCAAGATTCTCAGTCTCCGTTCCAACCTCCTTAGTGGAAAAATACCGTCCGATATTACCTCACTTCCTTCTCTCCATTATCTTTATCTCCAACATAATAACTTCTCTGGCGATGTCCCTTTCTCCCTTTCACCTACTCTTAATGTATTGGATCTATCATTCAATTTATTAGAAGGAAAGATTCCAAAGGCCGTACAAAATTTGACACAACTAACTGGATTGAATCTCCAGAACAACAATCTTTCTGGTTCTATACCTGATATCAACCTCCCTAAGCTCAAGCATTTCAATATAAGTTATAACCATCTTAGTGGTCTTATCCCAACTTTCTTTAATACATTCCCAAATTCGGCCTTCATTGGAAATCCTTTATTATGTGGATCACCTCTAAAAGCTTGCTCCACAGTCCTATCTCCAGCTCCTCATGCTCCATCTTCACCTGCCATTTCTCAAAAGCAGAGCTCCAAAAAACTGAAGATGGGAGTTATCATTGCTATTGCAGTTGGTGGATTTTTCCTTCTATTTCTCATAGTCCTTTTTGTGGTTTTGTGCTGTTTAAAGAAAAAGGATGGTGGAGGCGCTGGCGCTAGAAAAGGGAAGGTTTCTGGTGGTGGGAGAAGTGAAAAACCAAAAGAGGAGTTTGGTAGTGGTGTGCAGGAGCCTGAGAAAAACAAGCTGGTATTTTTTGAAGGCTGTTCATTTAATTTTGATCTTGAAGATCTATTAAGGGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTTCTCGAGGAACCTACCACTGTTGTGGTAAAAAGATTGAAGGAGGTGGTGGTGGGGAAGAGGGAATTTGAACAACAAATGGACATAGTGGGAAGGGTCGGGCAGCACCCAAATGTCATGCCACTCCGAGCATATTATTACTCAAAGGATGAAAAGCTCCTTGTTTATGATTATGTCCCTGGAGGCAGCTTGTCGTCACTCTTGCATGGAAACAGAGGAGGGGACAGAACTCCACTTGACTGGGACTCGAGAGTGAAAATTGCTCTTGCAACAGCAAAGGGAATTGCTCATATTCATGCAGTGGGTGGTCCAAAATTCACCCATGGAAATATCAAGGCCTCCAATGTCCTATTAATTCAAGATGTCAATGCTTGTGTCTCTGACTTTGGCCTTACCCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGGTTATCGTGCGCCTGAGGTGATCGAAGCTCGCAAACATACACACAAGTCAGATGTTTACAGTTTTGGCGTTCTTCTTCTCGAAATGTTAACCGGAAAAGCTCCCCTCCAATCACCTGGACGTGACGAAATGGTCGATCTTCCTCGGTGGGTACAGTCGGTTGTGAGGGAGGAATGGACAGCTGAGGTTTTCGATGTTGAACTAATGAGATACCAGAATATTGAAGAAGAGATGGTGCAGATGTTACAAATAGCAATGACTTGTGTAGCTAAGTTGCCCGACATGAGACCAAACATGGACGAAGTAGTTAGAATGATTGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCTTCCGAAGAGAACAAATCGAAGGACTCAAATGTGCAGACCCCATGA 1893 43.37 MKFCSASVFPLFFVIINLLHLTIADLESDKQALLEFASSVPHRRSLNWNDTTSVCTSWVGITCSADGTHVLTLRLPGIGLVGSIPPNTLGKLDGLKILSLRSNLLSGKIPSDITSLPSLHYLYLQHNNFSGDVPFSLSPTLNVLDLSFNLLEGKIPKAVQNLTQLTGLNLQNNNLSGSIPDINLPKLKHFNISYNHLSGLIPTFFNTFPNSAFIGNPLLCGSPLKACSTVLSPAPHAPSSPAISQKQSSKKLKMGVIIAIAVGGFFLLFLIVLFVVLCCLKKKDGGGAGARKGKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMDIVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGDRTPLDWDSRVKIALATAKGIAHIHAVGGPKFTHGNIKASNVLLIQDVNACVSDFGLTPLMNVPTSRTAGYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDEMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32996160 33000076 - ClG42_02g0194400.10 Clacu02g1944 244012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1944 630 SUPERFAMILY L domain-like 39 225 - -
Clacu02g1944 630 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Clacu02g1944 630 Pfam Protein tyrosine and serine/threonine kinase 341 602 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1944 630 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Clacu02g1944 630 MobiDBLite consensus disorder prediction 296 310 - -
Clacu02g1944 630 PANTHER OS05G0588300 PROTEIN 12 620 IPR050994 -
Clacu02g1944 630 CDD STKc_IRAK 343 606 - -
Clacu02g1944 630 Pfam Leucine rich repeat 82 129 IPR001611 GO:0005515(InterPro)
Clacu02g1944 630 FunFam Leucine-rich repeat receptor-like protein kinase 28 138 - -
Clacu02g1944 630 ProSiteProfiles Protein kinase domain profile. 337 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1944 630 FunFam Leucine-rich repeat receptor-like protein kinase 139 227 - -
Clacu02g1944 630 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Clacu02g1944 630 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Clacu02g1944 630 Pfam Leucine Rich Repeat 186 206 IPR001611 GO:0005515(InterPro)
Clacu02g1944 630 SUPERFAMILY Protein kinase-like (PK-like) 341 604 IPR011009 -
Clacu02g1944 630 MobiDBLite consensus disorder prediction 606 621 - -
Clacu02g1944 630 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Clacu02g1944 630 MobiDBLite consensus disorder prediction 285 310 - -
Clacu02g1944 630 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Clacu02g1944 630 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524(InterPro)
Clacu02g1944 630 FunFam pollen receptor-like kinase 1 305 412 - -
Clacu02g1944 630 MobiDBLite consensus disorder prediction 606 630 - -
Clacu02g1944 630 Gene3D Ribonuclease Inhibitor 86 231 IPR032675 -
Clacu02g1944 630 Gene3D Ribonuclease Inhibitor 22 85 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0206 Clacu-Chr1:2017868 Clacu02g1944 Clacu-Chr2:32996160 8.90E-133 dispersed
Clacu02g1944 Clacu-Chr2:32996160 Clacu04g0680 Clacu-Chr4:20751540 3.70E-182 dispersed
Clacu02g1944 Clacu-Chr2:32996160 Clacu11g0407 Clacu-Chr11:3813284 4.60E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73358 PF00069 Pkinase 2.30E-36 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1944 - - - 0.0