Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1951 ATGCAAGATCCAGCGCCATCAAACCCTATCCACACTCCCAATTCCAATCAAATTCCTCCACTCAATGTTGCAGCACCGCCGCCGAAGACTCACAAACCGCCGCCGGTGGCGAATGCGACGGCCTCCTCTTCATCAATGTTTGCCAATGCGAATACTGGCAATACCTCATTTATGCCTAGAGTAGGCTCTCATCATCGGAGAGCTCATTCAGAAGTTAGTTTCCGGTTGCCGGAGGATATGATGGATATATCCGCGTCGGATCCGTTCAATGGCGGTTCGTCCACCGCAAGTCTGGAGGAGATCGGATCGGAAGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGAGGAGGGAATTTTGTAGATCATAATGGTAATGGAGGAAGTGAAGGTGCTGGTGGTAGTGAAGGGGAGAAGACTTCGAAGCCAAGGCATCGGCATAGTGTTTCGGTGGATGGAACGACGTCGTCGTCGAGTATGTTTGGGGAAATTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAGTTGGCGGAGCTTTGGTCCAGTGATCCCAAACGCGCTAAAAGGATATTGGCAAATCGACAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCAAGATATATACAAGAATTGGAGCGCAAAGTGCAAACCCTTCAAACAGAAGCAACTACTCTATCAGCCCAATTGACTTTGTTCCAGCGAGACACAACGGGTCTCAGTACTGAAAATACAGAGCTTAAACTTCGGTTACAGGCTATGGAGCAACAAGCCCAATTGCGTGATGCTTTGAACGAAGCATTAAAGAAGGAAGTTGAGAGGCTTAAAATCGCTACTGGGGAAATGATGAGCCCATCTGAGTCTTTTAACTTAGGAATGCATCACATGGCGTACGCCCCGTCATCTTTCATTCAACTTTCACAGCAACAACCAGGATCTGTTGGCCTTCAAAATATGCAAATGCCACCATATAGCCATTCTCCATCCAATATGACTACTCACCCTCTGCTTCCATCAGAGTCTCATTCACTCTCTGAGGTTCTGCAGACCGACTCTCTTGGCCGATTGCAGGGTCTCGACATCAGTAGTAAAGGATCGTCGCTTGTGAAATCCGAGGGTCCTTCACTCTCTGCTAGTGAAAGCAGTACAACCTTTTGA 1170 47.78 MQDPAPSNPIHTPNSNQIPPLNVAAPPPKTHKPPPVANATASSSSMFANANTGNTSFMPRVGSHHRRAHSEVSFRLPEDMMDISASDPFNGGSSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNFVDHNGNGGSEGAGGSEGEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWSSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQQPGSVGLQNMQMPPYSHSPSNMTTHPLLPSESHSLSEVLQTDSLGRLQGLDISSKGSSLVKSEGPSLSASESSTTF 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33071551 33074784 + ClG42_02g0195100.10 Clacu02g1951 244019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1951 389 MobiDBLite consensus disorder prediction 1 63 - -
Clacu02g1951 389 SUPERFAMILY Leucine zipper domain 190 241 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1951 389 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1951 389 Coils Coil 206 233 - -
Clacu02g1951 389 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 37 342 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu02g1951 389 SMART brlzneu 186 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1951 389 MobiDBLite consensus disorder prediction 123 165 - -
Clacu02g1951 389 MobiDBLite consensus disorder prediction 1 19 - -
Clacu02g1951 389 CDD bZIP_plant_RF2 191 240 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1951 389 MobiDBLite consensus disorder prediction 36 59 - -
Clacu02g1951 389 MobiDBLite consensus disorder prediction 317 349 - -
Clacu02g1951 389 MobiDBLite consensus disorder prediction 366 389 - -
Clacu02g1951 389 Coils Coil 254 285 - -
Clacu02g1951 389 FunFam probable transcription factor PosF21 189 242 - -
Clacu02g1951 389 Gene3D - 189 242 - -
Clacu02g1951 389 MobiDBLite consensus disorder prediction 20 34 - -
Clacu02g1951 389 Pfam bZIP transcription factor 190 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1951 Clacu-Chr2:33071551 Clacu07g0525 Clacu-Chr7:6715184 5.60E-72 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47310 PF00170 bZIP_1 1.30E-08 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1951 - - - 0.0