Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1954 ATGTTAAAGAATACTCGAGATAGGAACCCCAGCAGCAACCTCCGTGATAGCAGCTCGGAATTTGGGTATGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGACGAAGTCTTGGGAAAAGGGGCCATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATAGAGGTGGCGTGGAGTCAGGTGAAACTCAATGAGGTCCTCCGATCGCCCGAGGATTTGCAGCGGCTGTATTCAGAGGTTCATCTACTTAGCACACTTAAGCATGAATCGATCATGCGATTCTACACCTCTTGGATCGACGTTGATCGCAAAACCTTCAACTTCATTACTGAACTGTTTACTTCTGGAACGCTCAGAGAATACGGAAAGAAATATAGGCGAATCGATATCAGAGCCATTAAGAGCTGGGCACGCCAGATTCTGCAGGGGCTCATTTATTTGCACGAACACGATCCCCCAATAATACACAGAGATCTGAAGTGTGATAATATCTTTGTGAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTTCATGGTTCCAGATCTGCCCACAGTGTTATAGGCACACCGGAGTTTATGGCGCCGGAACTATACGAGGAGAATTACAACGAACTAGTTGATGTCTACTCGTTTGGCATGTGTGTTCTAGAGATGCTTACTTCTGAGTACCCATATAGCGAGTGTTCTAATCCTGCACAGATTTACAAGAAAGTCACGTCGGGAAAGCTGCCAGCAGCATTGTACAAGATTCAAGATATGGATGCGCAGAGATTTGTTAAGAAATGCTTGTTACCAGTTTCGATGAGGGCGTCTGCAAAGGAACTCTTGTCCGATCATTTTCTCAAAGTTGATGGAGATAAACCTTCTTCGAAGGAGAGGACTCCCAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTGGGTGAAGGTTTAAGCAGGACCAACATGACGATCACGGGGAAGCTGAACCCCGAAGACAATACCCTCTTTCTCAGAGTTCAGATTGCCGATAAAGAAGGCTCTCTTAGGAACATATACTTCCCCTTCGACATAGTTAACGACACAGCATTAGATGTGGCAATGGAGATGGTGAAAGAGTTGGAGATATCTGATTGGGAACCGTTCGAAATAGCGGACATGATTGAAGGAGAGATATCGGCTCTAGTTCCGAACTGGAATAGAAGTGAGTTATCCAACCATAACCTCAGCTTTAGCTATGCAGAAGAAGATGATAATTCATCTCATCATACTTTTCGCTCAGTCTCCTCATCGTCCCAAGCAACAACTTTGGGTCTTATCACCTCCCCTAGAACAAACCAAAACATTTCAAATGGTTTTAGTTGGTTCCCAGACGATGTGCTTGATGATAGCAGTTCACAGTGCTCATCGGCGTCGGGAAAATATTCCAACTTGAATTACATCAGCAGCGACGAGAACGAGACCAGTATGAGTTCGGTCCAGATAGATCAACATACCAACATCAATAAGATTCACAATTCCTCAAGATTTTGTCCTGTTGAGAACCGGAAGAGCAAGGATTTCTTGGGTGGACTTCTATACAAGCAGAGCCAATGTGCAATAGCAGGGTTGTCTCAAGGAGTTGCCTCGAGGGGAAGGGATGGTTGTAAATTAACAAGGAACAGATCACTAGTAGATGTACATAGCCAATTGCTGCATCGTTCGTTGGTGGAGGAGGTGAATAGAAGACGATTATTCAAGACGGTTGGAGCAGTGGAAAGCATCGGATTTCAAGCACCTTGTGAGGTTTCTTCCAGCAAAAGAGGCTCGAGTAGGCAACCGATCGGGAACCGAAGTAGCGATGTAGTGAGAACAAGGAGAAACAGCGATATTAGGTGGCAAGATGTTGGAAGGAGAACATGA 1923 45.14 MLKNTRDRNPSSNLRDSSSEFGYVETDPTCRYGRFDEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDVDRKTFNFITELFTSGTLREYGKKYRRIDIRAIKSWARQILQGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIQDMDAQRFVKKCLLPVSMRASAKELLSDHFLKVDGDKPSSKERTPNQKPFLNAKEMEKLHLGEGLSRTNMTITGKLNPEDNTLFLRVQIADKEGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELSNHNLSFSYAEEDDNSSHHTFRSVSSSSQATTLGLITSPRTNQNISNGFSWFPDDVLDDSSSQCSSASGKYSNLNYISSDENETSMSSVQIDQHTNINKIHNSSRFCPVENRKSKDFLGGLLYKQSQCAIAGLSQGVASRGRDGCKLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKRGSSRQPIGNRSSDVVRTRRNSDIRWQDVGRRT 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33112920 33116224 + ClG42_02g0195400.10 Clacu02g1954 244022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1954 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1954 640 MobiDBLite consensus disorder prediction 603 626 - -
Clacu02g1954 640 MobiDBLite consensus disorder prediction 603 622 - -
Clacu02g1954 640 SUPERFAMILY Protein kinase-like (PK-like) 35 292 IPR011009 -
Clacu02g1954 640 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 595 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Clacu02g1954 640 CDD STKc_WNK 31 291 - -
Clacu02g1954 640 FunFam Probable serine/threonine-protein kinase WNK1 17 114 - -
Clacu02g1954 640 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1954 640 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Clacu02g1954 640 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
Clacu02g1954 640 MobiDBLite consensus disorder prediction 1 20 - -
Clacu02g1954 640 FunFam probable serine/threonine-protein kinase WNK9 116 296 - -
Clacu02g1954 640 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1954 640 SMART serkin_6 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1954 Clacu-Chr2:33112920 Clacu04g0695 Clacu-Chr4:20930292 2.50E-157 dispersed
Clacu02g1954 Clacu-Chr2:33112920 Clacu03g0309 Clacu-Chr3:3611049 3.80E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73359 PF00069 Pkinase 3.30E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1954 K08867 - csv:101203757 1172.15