Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1957 ATGCCGGAGATCGAACCATCTTCCCCCGACAACAACGCCCTTTTCGGCAAATATGAGCTCGGCAAGCTCCTCGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCCCGCGACCTTCGCTCCGGCCAAAGCGTCGCCGTCAAGGTTATCAACAAGAAGAAAATCTACGGCACAACCTTAATGTTCAACATCAAGCGGGAAATCGCCATTATGCGACGTCTCCGCCATCCAAACATCGTTAAACTCCACGAGGTTCTCGCTACCAAATCGAAGATCTACTTCGTCATGGAGTTCGTCAAAGGCGGCGAGCTTTTCGCTAAGATCGCCAAGGGCAGATTCAGTGAGGATCTCAGCCGGAAATTCTTCCAGCAGTTGATCTCCGCCGTTGGATTCTGTCACACGCGTGGAATCTACCATCGCGATCTGAAGCCGGAGAATCTTCTCGTCGATGAGAATGGAAATCTGAAGGTCTCTGACTTTGGTCTCAGTGCCGTAACGGAACAGATCCGCGCCGATGGCCTTTTACACACTCTTTGTGGAACTCCGGCGTATGTCGCGCCGGAGATTTTGTCGAAAAAGGGCTACGACGGTGCGAAAGTTGATGTGTGGTCATGTGGTGTGATTCTTTTCGTGTTGAACGCCGGTTACCTTCCGTTCAACGATCCGAATCTCATGGCGATGTATAAGAAGATTTACAAGGGGGAATACCGGTGCCCTAAATGGATGTCGCCGGATCTCAAGAGATTTCTGTCGCGACTTCTCGATACGAATCCCGAAACGAGGATAACCATTGAAGAGATTCTAAGTGATCCATGGTTCAGAAAGGGGGGAAATACAGAGATCAATTTCTACGATGATTACGAGATGAAATCGGAAGAGAAGGACGAATCATCGTCGACGAATTTGAACGCATTCGACATTATATCTTTCTCCTCAGGATTGGATCTCTCTGGTTTATTCGACAATTCACATAACGCAGTGGACGACAGTGAGCGATTCATATCGGCAGAATCGCCGGAGAAGATCGTGGAAAAACTTGAGGAATTTGCTAGGGCTGAGAATCTGAAGGTGAAGAAACATAAAGAGTTTGGAGTTGAATTGGATGCGCAGAGTCGTAATTTGGTCGTCGGAATTGAAATTTTCGGATTAACCGATGGATTGGTGGTGGTGGAGGTGCGAAGAAAATGCGGAGATTCAGAATCGTTTAAGCAAATGTTGAAGAAGAAGCTGAAAGGTCATCTCACCGGCAATGAAGCGTCGACGTCGACGTCCCGATAA 1275 48.55 MPEIEPSSPDNNALFGKYELGKLLGCGAFAKVYHARDLRSGQSVAVKVINKKKIYGTTLMFNIKREIAIMRRLRHPNIVKLHEVLATKSKIYFVMEFVKGGELFAKIAKGRFSEDLSRKFFQQLISAVGFCHTRGIYHRDLKPENLLVDENGNLKVSDFGLSAVTEQIRADGLLHTLCGTPAYVAPEILSKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMAMYKKIYKGEYRCPKWMSPDLKRFLSRLLDTNPETRITIEEILSDPWFRKGGNTEINFYDDYEMKSEEKDESSSTNLNAFDIISFSSGLDLSGLFDNSHNAVDDSERFISAESPEKIVEKLEEFARAENLKVKKHKEFGVELDAQSRNLVVGIEIFGLTDGLVVVEVRRKCGDSESFKQMLKKKLKGHLTGNEASTSTSR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33133370 33134644 + ClG42_02g0195700.10 Clacu02g1957 244025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1957 424 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Clacu02g1957 424 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1957 424 FunFam Non-specific serine/threonine protein kinase 8 300 - -
Clacu02g1957 424 Gene3D Phosphorylase Kinase; domain 1 5 99 - -
Clacu02g1957 424 CDD CIPK_C 302 413 - -
Clacu02g1957 424 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165(InterPro)
Clacu02g1957 424 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 405 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu02g1957 424 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Clacu02g1957 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1957 424 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Clacu02g1957 424 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1957 424 FunFam Non-specific serine/threonine protein kinase 296 416 - -
Clacu02g1957 424 SUPERFAMILY Protein kinase-like (PK-like) 15 280 IPR011009 -
Clacu02g1957 424 Gene3D Kinase associated domain 1, KA1 297 415 - -
Clacu02g1957 424 Pfam NAF domain 299 358 IPR004041 GO:0007165(InterPro)
Clacu02g1957 424 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1957 Clacu-Chr2:33133370 Clacu04g0699 Clacu-Chr4:21034220 1.90E-142 dispersed
Clacu02g1957 Clacu-Chr2:33133370 Clacu02g1958 Clacu-Chr2:33137351 1.90E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73360 PF00069 Pkinase 1.70E-72 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1957 - - - 0.0