Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1958 ATGGAGAATAAGGCAAGTGTGATGGTTCAACGATATGAATTAGGGAGATTGCTTGGCCAAGGAACCTTCGCAAAGGTGTATTATGCGAGGAATACAGGAAACAATCAAAGTGTGGCCATTAAGGTGATTGATAAAGAAAAGATTACGAAGGCTTCGCTAATCGATCAGATTAAGCGTGAAATATCGATTATGAGACTAGTTAGACATCCTAATATTCTACGTCTGTATGAGGTTATGGCCACCAAGACTAAGATCTACTTTGTTTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAAGTTGCTAAAGGGAGGCTGCAGGAGGACATTGCTTGGAAATACTTTTATCAGTTAATTAATGCTGTTGATTTTTGTCACAGCAGGGGAGTGTATCACCGTGATATAAAGCCGGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTATCTGATTTTGGTTTAAGTGCTTTAGCTGAGTCCAAGCGTCAAGACGGGTTGCTTCACACGACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCCTATTGGCAGGTTATCTCCCATTCCACAATTCGAATTTGATGGAGATGTATCGGAAGATTGGAAAAGCAGAGTATAAATGCCCTAGTTGGTTCCCTCGTGAAGTGCGGCGGTTGCTAAGCAGGATGCTTGATCCAGACCCCATTGCTAGGACTTCAATAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAGGGATTGAGGTCTAAGAATCTAAGAAGTGGAATAGAAAGCAATGCTGTAGCGTCTGAAGATGCAGCAGCTGTTTCTGGACCGTCCGAGAGAAGTGTGCCAGCAGAAGGAAATCAAGAGCCAAATAGACCTCCAACTTTGAATGCTTTCGATATCATCTCCCTTTCCGCGGGGTTCAATTTATCCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATTCTCTCAAAACTAGAAGAAATGGCTAAACTTCTTAGGTTTCGAGTACAGAAGAAAGAAGCAGGCCTATTGAAATTTGAGGCACTAACAGAGGGAAGAAAGGGGGTATTATCCATTGATACAGAGATCTTCGAGGTTACTCCATCTTTTTATTTGGTGGAAATGAAAAAATCAAACGGAGACACATTGGAATATCAGAAAATATTGAAAGAGGACATAAGGCCAGCTCTACAGGATATTGTATGGGTTTGGCGAGGAGAGCAGGAGCAGCAGCAACAAAATCCTCAGCCTCAGCCTCAGCCTCTTCAACCGCAGGATCGGGTTCGAGATCCTTATACAGAGCAAGAGGGTGCATCACAACCGCAGTAG 1422 42.12 MENKASVMVQRYELGRLLGQGTFAKVYYARNTGNNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNILRLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLQEDIAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNLMEMYRKIGKAEYKCPSWFPREVRRLLSRMLDPDPIARTSIAMIRQSSWFKKGLRSKNLRSGIESNAVASEDAAAVSGPSERSVPAEGNQEPNRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEMAKLLRFRVQKKEAGLLKFEALTEGRKGVLSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEQEQQQQNPQPQPQPLQPQDRVRDPYTEQEGASQPQ 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33137351 33138772 - ClG42_02g0195800.10 Clacu02g1958 244026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1958 473 CDD CIPK_C 315 429 - -
Clacu02g1958 473 Gene3D Transferase(Phosphotransferase) domain 1 2 304 - -
Clacu02g1958 473 FunFam Non-specific serine/threonine protein kinase 5 309 - -
Clacu02g1958 473 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 422 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu02g1958 473 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165(InterPro)
Clacu02g1958 473 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Clacu02g1958 473 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1958 473 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1958 473 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1958 473 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Clacu02g1958 473 MobiDBLite consensus disorder prediction 438 473 - -
Clacu02g1958 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1958 473 SUPERFAMILY Protein kinase-like (PK-like) 9 267 IPR011009 -
Clacu02g1958 473 Pfam NAF domain 311 369 IPR004041 GO:0007165(InterPro)
Clacu02g1958 473 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Clacu02g1958 473 MobiDBLite consensus disorder prediction 286 311 - -
Clacu02g1958 473 CDD STKc_SnRK3 11 265 - -
Clacu02g1958 473 Gene3D Kinase associated domain 1, KA1 309 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1958 Clacu-Chr2:33137351 Clacu04g0701 Clacu-Chr4:21130902 1.40E-173 dispersed
Clacu02g1957 Clacu-Chr2:33133370 Clacu02g1958 Clacu-Chr2:33137351 1.90E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73361 PF00069 Pkinase 1.00E-74 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1958 - - - 0.0