Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1961 ATGTCCACCACACTCCTCTTCTTTGACCTAAAAAAGCTTCAGTATTTCCTAAAGCAAAATGGCTTTTACTACTTCTCACACTCCAAAACATGTGGTGGTTTCTGTTTTAGCTTTGCAGTTCGCTGCGGCGTTCAATCTGCCATTGCTAAGGAAACTCGTATAGGCGCTTCCCTCCTTCGTCTTCACTTCCATGACTGTTTTGTTAACGGATGTGATGGGTCAATTCTTTTAGATGATACTGCAACTTTTAGAGGGGAGCAAACTGCGCCTCCGAATAATAGGTCTGTTAGAGGCTTTGATGTAATAAAAGCCATCAAGAGTAACGTAGAAAAATTTTGTCCTGGTGTGGTTTCTTGCGCTGATATTTTGACTCTTACTGCACGTGACTCTGTTAACATTTTGGGAGGACCAACTTGGGACGTGAAATTAGGAAGAAGAGATTCAAAAACATCCAGCTTCTCCGCTGCCAGTAGTGGCGTCATCCCTCCACCCACTTCAACCCTTGCCAACCTCATTAATCGATTCAGTGCTGTAGGCCTCTCCGCCAAAGACATGGTTGCCTTGTCTGGTGCGCACACGATAGGTCTAGCAAGGTGTATATCCTTTAGGAATCGTATATACAATGAGAGCAACATAGACGCTTCATTCGCAAAGCTAAGACAGAGGAATTGCCCAAGAAGTGGAGGAGATGACAATCTTACCCCTCTAGACGTTGCTACCCCAAAGCTTTTCGACAACCATTACTACAAGAATCTTTTGAACAAAAAGGGGTTGCTCCACTCCGATCAAATCCTCCACAACGGCGGATCCACTGATTCCTTAGTCAAACAGTATAGTCAAAATGATAAGACTTTCGACGCCGATTTCGTGGCAGCAATGATTAAAATGGGAGACATCCGACCACTCACCGGATCACAAGGCGAGATCAGAAAGGTCTGCAGCAGACCCAACTAA 954 44.76 MSTTLLFFDLKKLQYFLKQNGFYYFSHSKTCGGFCFSFAVRCGVQSAIAKETRIGASLLRLHFHDCFVNGCDGSILLDDTATFRGEQTAPPNNRSVRGFDVIKAIKSNVEKFCPGVVSCADILTLTARDSVNILGGPTWDVKLGRRDSKTSSFSAASSGVIPPPTSTLANLINRFSAVGLSAKDMVALSGAHTIGLARCISFRNRIYNESNIDASFAKLRQRNCPRSGGDDNLTPLDVATPKLFDNHYYKNLLNKKGLLHSDQILHNGGSTDSLVKQYSQNDKTFDADFVAAMIKMGDIRPLTGSQGEIRKVCSRPN 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33147090 33148612 - ClG42_02g0196100.10 Clacu02g1961 244029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1961 317 Gene3D Peroxidase, domain 2 162 296 - -
Clacu02g1961 317 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Clacu02g1961 317 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 SUPERFAMILY Heme-dependent peroxidases 35 317 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 Gene3D - 37 314 - -
Clacu02g1961 317 FunFam Peroxidase 26 168 - -
Clacu02g1961 317 PANTHER PEROXIDASE 72-RELATED 37 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 Pfam Peroxidase 41 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1961 317 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Clacu02g1961 317 CDD secretory_peroxidase 21 315 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu02g1961 317 FunFam Peroxidase 162 296 - -
Clacu02g1961 317 ProSiteProfiles Plant heme peroxidase family profile. 40 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1961 Clacu-Chr2:33147090 Clacu02g1963 Clacu-Chr2:33158513 3.60E-117 dispersed
Clacu02g1961 Clacu-Chr2:33147090 Clacu02g1962 Clacu-Chr2:33154109 3.20E-118 tandem
Clacu02g1961 Clacu-Chr2:33147090 Clacu03g0025 Clacu-Chr3:459239 2.30E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1961 K00430 - csv:101207371 503.056