Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1963 ATGGGCGCTTCTCTTCTCCGGCTCCACTTTCACGATTGTTTCGTTAATGGTTGCGATGGATCCATCCTTCTAGATGATACTCCTACATTTATAGGAGAGCAAACTGCAGCTCCTAACAATAGATCTGTTAGAGGGTTCAACGTGATTGAGAGTATAAAGAAAAACATAGAAAAAAATTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTGACTCTTTCTGCTCGCGACTCCGTTGTAGCATTGGGAGGGCCAAGTTGGAAAGTGAAATTGGGAAGAAGAGATTCCAAAACAGCCCGTTTCTCTGATGTCATTGGTGCTATTCCTCCACCAACCTCCACTCTTGCCACCCTCATCAATCGATTCAATACCAAAGGCCTTTCCCGAAAGGATTTGGTTGCTTTATCTGGGGCTCATACAATTGGGAAAGCAAGGTGTTTGTTTTTCAAGAACCGCATTTATAATGAAACCAACATCGACAATTCGTTCGCTAAGGAGAGGCGAAAGAACTGCCCAAAGAATGGAGGAGATGACAATCTTGCGCCTTTGGACTTCAGAACCCCAAAACTTTTTGACAACTATTACTACAAGAACCTTTTGGAGAAAAAGGCTTTGCTCCGCTCCGATCAGGTGCTACACGATGGCGGATCCACTGATTCTTTGGTTGAACTCTATAGTCACGACAATGCTGCCTTTGAATCTGACTTCGTGACAGCTATGATCAAGATGGGTGACATTCAGCCGCTCACTGGATCGCGAGGCGAGATCCGAAAAGTCTGCAGTCGACCCAACTAA 792 44.95 MGASLLRLHFHDCFVNGCDGSILLDDTPTFIGEQTAAPNNRSVRGFNVIESIKKNIEKNCPGVVSCADILTLSARDSVVALGGPSWKVKLGRRDSKTARFSDVIGAIPPPTSTLATLINRFNTKGLSRKDLVALSGAHTIGKARCLFFKNRIYNETNIDNSFAKERRKNCPKNGGDDNLAPLDFRTPKLFDNYYYKNLLEKKALLRSDQVLHDGGSTDSLVELYSHDNAAFESDFVTAMIKMGDIQPLTGSRGEIRKVCSRPN 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33158513 33159745 - ClG42_02g0196300.10 Clacu02g1963 244031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1963 263 Gene3D Peroxidase, domain 2 108 242 - -
Clacu02g1963 263 ProSiteProfiles Plant heme peroxidase family profile. 1 263 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 FunFam Peroxidase 108 242 - -
Clacu02g1963 263 Pfam Peroxidase 1 226 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Haem peroxidase superfamily signature 64 81 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Haem peroxidase superfamily signature 82 94 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 CDD secretory_peroxidase 1 261 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu02g1963 263 PRINTS Plant peroxidase signature 237 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Plant peroxidase signature 181 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Plant peroxidase signature 197 214 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Plant peroxidase signature 63 73 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Plant peroxidase signature 82 97 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Plant peroxidase signature 129 141 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PRINTS Plant peroxidase signature 44 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 PANTHER PEROXIDASE 72-RELATED 1 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 SUPERFAMILY Heme-dependent peroxidases 1 263 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1963 263 ProSitePatterns Peroxidases active site signature. 2 13 IPR019794 GO:0004601(InterPro)
Clacu02g1963 263 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Clacu02g1963 263 Gene3D - 1 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1961 Clacu-Chr2:33147090 Clacu02g1963 Clacu-Chr2:33158513 3.60E-117 dispersed
Clacu02g1963 Clacu-Chr2:33158513 Clacu11g0725 Clacu-Chr11:7114727 4.20E-95 dispersed
Clacu02g1962 Clacu-Chr2:33154109 Clacu02g1963 Clacu-Chr2:33158513 4.90E-136 tandem
Clacu02g1963 Clacu-Chr2:33158513 Clacu02g1964 Clacu-Chr2:33162974 1.00E-93 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1963 K00430 - csv:101208108 488.034