Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1964 ATGGCCATTATCACTTATTATTCTCCTCGTGACTCTGTTGTAGTGCTTGGAGGGCCAAGTTGGGAGGTGAAGTTGGGAAGAAGAGATTCTAAAACAGCTAGCTTCTCCGACGTCACAGGTGCTATTCCTCCACCAACCTCTAACCTCGACACTCTCATCAATCGATTCAACTCCAAAGGCCTCTCCCCTCGAGACTTGGTTGCCTTATCTGGGGCCCACACGATCGGGCAAGCAAAGTGTTTGTTTTTCAAGAACCGTATATATAACGAGACCAACATTGATGAGTCGTTTGCTGAGGAGAGACAAAGAAATTGCCCAACAAATGGAGGCGATGAAAATCGTGCTCCTTTGGACTTTAGAACCCCAAAACTTTTCGACAACTACTACTACAAGAACCTCTTGGAGAAGAAGGCTTTGCTCCGCTCCGATCAAGTGCTCCACGATGGTGGATCCACTGATTCCTTAGTTGAACTCTATGGTGACGACAGTGATGCCTTTGAATCTGACTTCGTGGCAGCTATGATCAAGATGGGCGACATTGAGCCGCTCACTGGATCACAAGGTGAAATTCGCAAGATTTGCAGCCGACCCAACTAA 597 47.24 MAIITYYSPRDSVVVLGGPSWEVKLGRRDSKTASFSDVTGAIPPPTSNLDTLINRFNSKGLSPRDLVALSGAHTIGQAKCLFFKNRIYNETNIDESFAEERQRNCPTNGGDENRAPLDFRTPKLFDNYYYKNLLEKKALLRSDQVLHDGGSTDSLVELYGDDSDAFESDFVAAMIKMGDIEPLTGSQGEIRKICSRPN 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33162974 33164295 - ClG42_02g0196400.10 Clacu02g1964 244032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1964 198 Pfam Peroxidase 6 161 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 Gene3D Peroxidase, domain 2 43 177 - -
Clacu02g1964 198 Gene3D - 4 195 - -
Clacu02g1964 198 SUPERFAMILY Heme-dependent peroxidases 6 198 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 FunFam Peroxidase 43 177 - -
Clacu02g1964 198 PANTHER PEROXIDASE 72-RELATED 4 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 ProSitePatterns Peroxidases proximal heme-ligand signature. 65 75 IPR019793 -
Clacu02g1964 198 PRINTS Plant peroxidase signature 17 32 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 PRINTS Plant peroxidase signature 64 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 PRINTS Plant peroxidase signature 132 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 PRINTS Plant peroxidase signature 172 185 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 PRINTS Plant peroxidase signature 116 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 PRINTS Haem peroxidase superfamily signature 118 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 PRINTS Haem peroxidase superfamily signature 17 29 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 PRINTS Haem peroxidase superfamily signature 65 80 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1964 198 ProSiteProfiles Plant heme peroxidase family profile. 1 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1962 Clacu-Chr2:33154109 Clacu02g1964 Clacu-Chr2:33162974 8.10E-99 dispersed
Clacu02g1964 Clacu-Chr2:33162974 Clacu11g0236 Clacu-Chr11:2127974 1.30E-61 dispersed
Clacu02g1963 Clacu-Chr2:33158513 Clacu02g1964 Clacu-Chr2:33162974 1.00E-93 tandem
Clacu02g1964 Clacu-Chr2:33162974 Clacu02g1965 Clacu-Chr2:33170668 3.90E-45 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1964 K00430 - csv:101204245 368.622