Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1965 ATGAATTCTTCGTCGGGGCCATCACGGCCGGACCTCCCCGTAGCACCTAATCGCGGGAAGTTTCAATCGGAGACGGAGAGATTGAGCTCCGACGTTGGTGGACTGGAAGGTTCATTGCTTCAGATGGTTAATGATCACCACTACGCCTCTCTCAAGCTCAGGGAAAACTCCGAGAAAGCGAAGAAAGATGCTATACAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTCGAAATTAGGGCTTTAGCGACTACGATTGCCCGATTTACGAAGCAGACCGATCAATGGCTTGCCGCCACTCACGCTTTGAACACTGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCGATTCTCTCAGTTTTGGATTTGTAGAATACTCATTTCGACTTCTGAGGCCAAGTCATAGGTTCCAAGCTTTAAATATTCAGGAGGAAAATTTGATTACAAACGCTTCAAGTGGCAGAATTCTAGTCGTTAGGCAGTGTGTTTCCATGAGCCAATTGCTTGCAGCTCGTGACTCCGTTGCTATTCTTGGAGGACCAAACTACAAAGTATTAGTAGGAAGAAGAGACGCAAGAAGAGCGAGTGCAGAAGATGCCAATAGAAATCTCCCTCCGCCATTTTTCAGCTTCACACAACTTCTATCCAACTTCCAATCTCATGGCCTAAACCTTAAGGACCTCGTCGTCTTGTCAGCCGGCCACACTCTCGGGTATGCTCGGTGCACCAATTTTCGAACTAGGATATACAACGACACCAACATCAACCCGAAATTCGCAGGGGTATTGAAGGGAAAGTGCCCACAGAGTGGGGGCGATGACAATCTGAAGGGGCTTGACATGACTCCAAATTTCTTTGACAATGCTTACTTCAAGGCTTTGTTGACAAACAATGGCCTTCTACATTCTGACCAGGAACTGTTCGGTGGCGGCAACAACGACAGCGATGGTTTGGTGAAGTATTATAGCAGATATCCAATTGCCTTTAGAAATGATTTTGGTTCTTCCATGATCAAAATGGGGAATATGAACCCACTTACAGGAAGTAATGGAGAAATCAGAGCCAATTGCAGGCTTGTCAATTGA 1158 45.94 MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDSLSFGFVEYSFRLLRPSHRFQALNIQEENLITNASSGRILVVRQCVSMSQLLAARDSVAILGGPNYKVLVGRRDARRASAEDANRNLPPPFFSFTQLLSNFQSHGLNLKDLVVLSAGHTLGYARCTNFRTRIYNDTNINPKFAGVLKGKCPQSGGDDNLKGLDMTPNFFDNAYFKALLTNNGLLHSDQELFGGGNNDSDGLVKYYSRYPIAFRNDFGSSMIKMGNMNPLTGSNGEIRANCRLVN 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33170668 33179524 + ClG42_02g0196500.10 Clacu02g1965 244033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1965 385 Pfam GCN5-like protein 1 (GCN5L1) 42 141 - -
Clacu02g1965 385 PANTHER PEROXIDASE 72-RELATED 187 383 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1965 385 ProSiteProfiles Plant heme peroxidase family profile. 193 385 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1965 385 Gene3D Peroxidase, domain 2 229 364 - -
Clacu02g1965 385 Pfam Peroxidase 192 346 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1965 385 PRINTS Plant peroxidase signature 317 334 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1965 385 PRINTS Plant peroxidase signature 301 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1965 385 PRINTS Plant peroxidase signature 250 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1965 385 PRINTS Plant peroxidase signature 359 372 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1965 385 PRINTS Plant peroxidase signature 203 218 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1965 385 Gene3D - 188 385 - -
Clacu02g1965 385 ProSitePatterns Peroxidases proximal heme-ligand signature. 251 261 IPR019793 -
Clacu02g1965 385 SUPERFAMILY Heme-dependent peroxidases 192 385 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g1965 385 MobiDBLite consensus disorder prediction 1 30 - -
Clacu02g1965 385 FunFam Peroxidase 229 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1965 Clacu-Chr2:33170668 Clacu11g0725 Clacu-Chr11:7114727 1.10E-51 dispersed
Clacu02g1964 Clacu-Chr2:33162974 Clacu02g1965 Clacu-Chr2:33170668 3.90E-45 tandem
Clacu02g1965 Clacu-Chr2:33170668 Clacu02g1966 Clacu-Chr2:33185725 1.60E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1965 K00430 - csv:101204979 338.961