Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1968 ATGGTTATGGAGTTTTTGTTCTCTAGTAATTCTGTAGAGGATCCTAGTGGCGGCCCAACCTTTGGCCATCGGAGACTGCCGGAGCATGTGGCGGCCGCGATGTCTAAACCGCCATTGCTCCCCCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCTTTCTTCACTATCCCCCCTGGTATCAGCCCCACCCAATTTCTTCACTCCCCTCTCCTCCTCAACTCTCCTCATATTCTGCCATCGCCGTCTACCGGAGCAATATCCGCCGGAGATTTGACCGGAACCAGTAACAATTCCGGCCACCATCAACAGAACATCAAACAAGAACACAACAACTTTACTGAACTCTCATTTCCTCGTACTCATCACACCACAAGATCTTCATCATCATCAATGTTTCAACCCTCTTCAACAGTGCAAAGTCAGCGATGGGGTTGTGAAGCCGCCATGAACGGCGGCTCCGAAGCGGAGCAGCGGGCAGAATGGGAGTTGAGAAAACGAGGAACTGAGGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTAGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAAAGATCATTGAATGGTCAAATTACTGAAATCGTTTACAAAAGTAAACATAACCATCCTAAACCAGACTTCACAAGAAGGTCATCATCGTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTGTTATCAGAAGCTTTACCCGCAGCTATGGCGGCAGAGCCAAAGAATTCAATTGCCTCTGATTCCCTCACCACGCCGGAGGATTCTTCAATCACGATTGGGGATGATGATGATGATTCCCACGGAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTCTTCAGTAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAGTTCAAACAATTAGCAATGTGGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATTCAAATCCAAGGAGCTATTACAAGTGCACATATGCAGGATGTGGAGTGAGAAAGCACATAGAGAGAGCATCCCACGATATAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAGTTCCGGTAGCCCGTGGCAGCGGCGGCGGTAGACCGATACTTATTAGTAGTGAAGGAAGTAATAATGATGTTGCATCGAACGGCGGTGGCAACCGACGACCGAGTTCAGAGATCTGTAGTGGTAATAATGGATTGTGGGAGTTGACAAACATGGTGTGGAGGAGCAAAGAAGAAGCCGTGGATGACATATTTATGGGTTGTTATTAG 1365 45.49 MVMEFLFSSNSVEDPSGGPTFGHRRLPEHVAAAMSKPPLLPPLSPPLYSPSSFFTIPPGISPTQFLHSPLLLNSPHILPSPSTGAISAGDLTGTSNNSGHHQQNIKQEHNNFTELSFPRTHHTTRSSSSSMFQPSSTVQSQRWGCEAAMNGGSEAEQRAEWELRKRGTEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVERSLNGQITEIVYKSKHNHPKPDFTRRSSSSFSSSSSSSSSSLLSEALPAAMAAEPKNSIASDSLTTPEDSSITIGDDDDDSHGADAKRWKSESEKEIMSSVGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVKGNSNPRSYYKCTYAGCGVRKHIERASHDIRAVITTYEGKHNHEVPVARGSGGGRPILISSEGSNNDVASNGGGNRRPSSEICSGNNGLWELTNMVWRSKEEAVDDIFMGCY 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33198552 33203609 + ClG42_02g0196800.10 Clacu02g1968 244036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1968 454 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 393 IPR044810 GO:0003700(InterPro)
Clacu02g1968 454 SUPERFAMILY WRKY DNA-binding domain 168 227 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1968 454 MobiDBLite consensus disorder prediction 217 246 - -
Clacu02g1968 454 FunFam WRKY transcription factor 57 314 388 - -
Clacu02g1968 454 MobiDBLite consensus disorder prediction 387 422 - -
Clacu02g1968 454 ProSiteProfiles WRKY domain profile. 323 388 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1968 454 ProSiteProfiles WRKY domain profile. 169 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1968 454 MobiDBLite consensus disorder prediction 282 303 - -
Clacu02g1968 454 MobiDBLite consensus disorder prediction 230 246 - -
Clacu02g1968 454 SMART WRKY_cls 328 387 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1968 454 SMART WRKY_cls 168 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1968 454 Pfam WRKY DNA -binding domain 329 386 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1968 454 Pfam WRKY DNA -binding domain 169 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1968 454 MobiDBLite consensus disorder prediction 400 422 - -
Clacu02g1968 454 MobiDBLite consensus disorder prediction 83 103 - -
Clacu02g1968 454 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1968 454 MobiDBLite consensus disorder prediction 119 143 - -
Clacu02g1968 454 Gene3D WRKY domain 313 389 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1968 454 Gene3D WRKY domain 155 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1968 454 MobiDBLite consensus disorder prediction 261 308 - -
Clacu02g1968 454 FunFam WRKY transcription factor 156 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1968 Clacu-Chr2:33198552 Clacu03g0017 Clacu-Chr3:374997 1.80E-77 dispersed
Clacu02g1968 Clacu-Chr2:33198552 Clacu10g2214 Clacu-Chr10:35149086 2.60E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47312 PF03106 WRKY 1.50E-22 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1968 K13424 - mdm:103447297 358.607