Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1978 ATGGCTACCGAGGCGACCGAAGCCACGACCAAGTTCCAGAGTCCGGATTTTCGTCCGGTACCGTCGCCTCCAGATTTCCATCCCGAGATTATGGTCTCAGCTCATGATGGTCTTCGGTTCTGGCAGTTCATGATTGCCGGTTCAATCGCAGGGTCTGTTGAGCATATGGGTATGTTTCCGGTTGATACTGTCAAGACCCATATGCAAGCACTTGGTTCATGTCCAATTAAATCTGTTGGAGTTCGACAAGCCCTTAGGTCAATTTTGAAATCAGAGGGACCGGCTGGGTTTTATCGTGGTATTGGTGCCATGGGTCTTGGAGCTGGACCTGCACATGCCGTATATTTTACTGTCTACGAGAATTGTAAGAAGTTTTTCTCCGGTGGGGATCCTAATAATTCTATTGCTCACGCTGCTTCTGGCGTCTGTGCAACGGTGGCGAGTGACGCTGTGTTTACACCGATGGATATGGTTAAACAGAGGCTGCAGCTGAGTAATAATTCCTACAAGGGAGTTTTGGATTGTATCAAAAGGGTCCTTAGAGAGGAGGGTGTTAAAGCATTTTACGCATCATATAGAACTACAGTGTTGATGAATGCTCCATTTACTGCTGTGCATTTTGCTACTTATGAAGCTGCAAAGAGAGGTTTGATGGAGGTTTCGCCAGAGAGTGTAAATGATGAACAGTGGATTGTTCATGCGACGGCAGGAGCTGCTGCTGGAGCCTCAGCTGCACTTGTTACAACGCCGCTTGATGTGGTTAAGACTCAATTACAATGTCAGGGTGTATGTGGATGCGATAGATTCAAAAGCGGGTCAATCAGGGACGTAATTCGGACAATACTCAAGAAGGATGGATATAGAGGGCTTATGAGAGGGTGGGTTCCAAGGATGCTCTTTCATGCTCCGGCTGCAGCTATATGCTGGTCGACATATGAAGCGTTAAAGTCTTTCTTCCACGAGCTCAATGGCAGTGGCAGCGACAACTTGACATGA 996 47.39 MATEATEATTKFQSPDFRPVPSPPDFHPEIMVSAHDGLRFWQFMIAGSIAGSVEHMGMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKKFFSGGDPNNSIAHAASGVCATVASDAVFTPMDMVKQRLQLSNNSYKGVLDCIKRVLREEGVKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVNDEQWIVHATAGAAAGASAALVTTPLDVVKTQLQCQGVCGCDRFKSGSIRDVIRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEALKSFFHELNGSGSDNLT 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33293499 33296828 - ClG42_02g0197800.10 Clacu02g1978 244046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1978 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Clacu02g1978 331 Gene3D Mitochondrial carrier domain 167 331 IPR023395 -
Clacu02g1978 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Clacu02g1978 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Clacu02g1978 331 PANTHER MITOFERRIN-1-RELATED 33 321 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Clacu02g1978 331 Pfam Mitochondrial carrier protein 228 321 IPR018108 -
Clacu02g1978 331 Pfam Mitochondrial carrier protein 38 128 IPR018108 -
Clacu02g1978 331 Pfam Mitochondrial carrier protein 132 219 IPR018108 -
Clacu02g1978 331 Gene3D Mitochondrial carrier domain 24 166 IPR023395 -
Clacu02g1978 331 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085(InterPro)
Clacu02g1978 331 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085(InterPro)
Clacu02g1978 331 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085(InterPro)
Clacu02g1978 331 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085(InterPro)
Clacu02g1978 331 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085(InterPro)
Clacu02g1978 331 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
Clacu02g1978 331 FunFam Mitochondrial RNA-splicing protein MRS3 167 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1978 Clacu-Chr2:33293499 Clacu04g0732 Clacu-Chr4:21567128 7.80E-123 dispersed
Clacu02g1978 Clacu-Chr2:33293499 Clacu08g0880 Clacu-Chr8:18858415 2.40E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1978 K15113 - csv:101215924 637.876