Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1981 ATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAAGACTGCATTTTTGCACCTTATTTCCCTTCCGATGACCCTTTCAAATTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGAAGTTCCAATAGAACAGAGAGCAGATGCAGTGAGCAGTATGGTATATGAAGCGAGTGCAAGAATGCGGGATCCAGTGTATGGTTGTGTAGGGACAATCTCGTTTCTACAAAATGAAGTGTCCCGATTGGAAATGCAACTCGGAGCAGCACAAGCAGAAATTTTGACTTTGCATATGCAGCAACAAGCAACTCCAACAACATTTCCGACGACGACGACCCACACAGATCAAGATGATCAAAATCTTGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTTCCATATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGA 486 45.06 MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPIEQRADAVSSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQATPTTFPTTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33308002 33308763 + ClG42_02g0198100.10 Clacu02g1981 244049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1981 161 Coils Coil 86 106 - -
Clacu02g1981 161 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Clacu02g1981 161 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Clacu02g1981 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1981 Clacu-Chr2:33308002 Clacu09g2278 Clacu-Chr9:37532957 1.30E-38 dispersed
Clacu02g1981 Clacu-Chr2:33308002 Clacu07g0465 Clacu-Chr7:5665260 1.60E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47313 PF03195 LOB 4.50E-40 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1981 - - - 0.0