Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2003 ATGATGTGCAATGGTTGCAATAGGAAATCTGCAAGCCCTAACTTCGTCATGGACGACAGATTTAGACGAGGGGGATTGGGATTTTGTATCTCTGTTTTGCTTGAATTTTCAGCTACAGATGATCTGATTGGATTTAGGAGTGCTGTTGAGGAAGGTGGTTATAATATTGATGAGGCAAGCTTGTGGTATGGGAGGATTTTCGGTTCAAAAAAGATGGGGTATGAAGAAAGGACTCCTCTTATGGTTGCAGCCATGTTTGGGAGTATGAATGTTCTGTCTTATATCCTTCACAGTGGTCGTGTTGATGTTAATCGAGCTTGTGGTTCAGATGGCGCAACGACTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTGCGGATCAGGTTGTCAAACTCTTGATTGATGCTTCCGCTGATGTGAGTGCTGTTGATGCAAACGGTAACCGGCCTGGTGATTTGATTGCTCCTGATTTTACTTCAGCCTCCTATTCAAGGAAAAAAGTGTTACAACAATTACTAAATGATCGTGAAGAAGCCCTTGGTTCATCCGAGTCAATATTTTACGAGAGAGAAACACAGGAGCCATTGGAGCTATCACCACCTCGGGCTTCAAGAGATGGGACAGAGAAGAAAGAGTATCCGGTTGATCTCTCACTTCCAGACATCAAGAACGGAATCTATAGCACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCTCATGATTGGACAGAGTGTCCATTTGTTCACCCTGGGGAAAATGCAAGGAGGCGGGATCCTAGGAAATACCATTACAGCTGCGTGCCATGTCCAGAATTCAGAAAAGGAACATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAATATCGTACCCGTCTTTGCAAAGATGAAACTGGATGCACCCGAAAAGTCTGTTTCTTTGCTCACAAGCCGGAAGAACTCCGCCCCTTGTATGCTTCAACTGGTTCTGCTGTACTGTCTCCAAGATCAATCTGTGGTTCTTCACTCGACATTGCGTCGATCAGCCCACTTACCCTTGGTTCTCCTTCAGCTCTGATACCTCCTTCATCAACTCCACCTTTAACCCCTTCTGGAGTTTCCTCTCCAATGAGTGGAACCATGTGGCAGACTCAATGTAATATGGCGCCCCCGACCTTGCAGCTTCCAGGTAGCAGGCTAAAGGCTTCTTTGAGCGCAAGAGACATAGATATAGATGTTGAGTTACTCGGTCTCGAAAGTCAGCGCCGTAGACAACAACAGCTAATGGATGAGATGTCCTGTCTACCTTCCCCTACCAGATGGAACAATGGCTTGCCAACCCCTCCATCTTTTCCATCCCCGAGGAGTAGAAATGGAGAACTTAATGGACTTGGAGGCATGAACCCTAATAACCTCGAGGACCTTTTCGGGTCTGTAGATCCTGCGATTTTGCCTCAATTACAAGGACTTTCATTGGATTCTGTGGGATCTCAGGTACAATCCCCTTCTGGGATTCAGATGCGCCAAAGCTTGAATCAGTCTTTCCTCTCGAGCTATGCTAACAGCATTGGATCTCCTCCTGCAAGATCATCTCAACCATCCGTGTCTACTGCAGCTAGCGTTCTGAGTTCTAGGGCTGCTGCTTTCGCCAAGCGTAGCCAGAGCTTTATCGAGCGTAGCGTAGTGAACCGTCATTCTGGACTTTCACCCCCAGCTACATCCACAACTGCCATGCCTTCGAGCCTGTCTGATTGGGGTTCGCCGGATGGAAAACTAGACTGGGGAATTCGTGGAGAAGAACTCAACAAGTTAAGGAAGTCTGCATCATTTGGGTTCCGAAACAGTTGCACCAGCACTCTTGCCACGTCCACAATGCACGCTGCCACTCTCGAGCCAGACGTGTCGTGGGTTCAGTCCCTGGTGAAGGATGGTCCATCCGAAAATGCTGTGCAGCTGAGTATGGACGAGCAGCAGCAACAGCAGCTTTGTCATCTCGACAATGGCGATTCAAAGCGAAGGTACATGGAACAGGAGCAGTTAGTTGCTTGA 2082 47.31 MMCNGCNRKSASPNFVMDDRFRRGGLGFCISVLLEFSATDDLIGFRSAVEEGGYNIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSMNVLSYILHSGRVDVNRACGSDGATTLHCAVAGGSAVADQVVKLLIDASADVSAVDANGNRPGDLIAPDFTSASYSRKKVLQQLLNDREEALGSSESIFYERETQEPLELSPPRASRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISPLTLGSPSALIPPSSTPPLTPSGVSSPMSGTMWQTQCNMAPPTLQLPGSRLKASLSARDIDIDVELLGLESQRRRQQQLMDEMSCLPSPTRWNNGLPTPPSFPSPRSRNGELNGLGGMNPNNLEDLFGSVDPAILPQLQGLSLDSVGSQVQSPSGIQMRQSLNQSFLSSYANSIGSPPARSSQPSVSTAASVLSSRAAAFAKRSQSFIERSVVNRHSGLSPPATSTTAMPSSLSDWGSPDGKLDWGIRGEELNKLRKSASFGFRNSCTSTLATSTMHAATLEPDVSWVQSLVKDGPSENAVQLSMDEQQQQQLCHLDNGDSKRRYMEQEQLVA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33467843 33469924 - ClG42_02g0200300.10 Clacu02g2003 244071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2003 693 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515(InterPro)
Clacu02g2003 693 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Clacu02g2003 693 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Clacu02g2003 693 Gene3D - 272 334 - -
Clacu02g2003 693 SMART ANK_2a 75 105 IPR002110 GO:0005515(InterPro)
Clacu02g2003 693 SMART ANK_2a 110 142 IPR002110 GO:0005515(InterPro)
Clacu02g2003 693 MobiDBLite consensus disorder prediction 576 598 - -
Clacu02g2003 693 SUPERFAMILY Ankyrin repeat 72 150 IPR036770 -
Clacu02g2003 693 PANTHER UNKEMPT FAMILY MEMBER 72 654 IPR045234 -
Clacu02g2003 693 Pfam Ankyrin repeats (3 copies) 75 143 IPR002110 GO:0005515(InterPro)
Clacu02g2003 693 SMART c3hfinal6 271 297 IPR000571 GO:0046872(InterPro)
Clacu02g2003 693 SMART c3hfinal6 306 329 IPR000571 GO:0046872(InterPro)
Clacu02g2003 693 MobiDBLite consensus disorder prediction 576 594 - -
Clacu02g2003 693 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872(InterPro)
Clacu02g2003 693 Gene3D - 51 177 IPR036770 -
Clacu02g2003 693 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 296 IPR000571 GO:0046872(InterPro)
Clacu02g2003 693 MobiDBLite consensus disorder prediction 191 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2003 Clacu-Chr2:33467843 Clacu03g1629 Clacu-Chr3:29942078 8.20E-50 dispersed
Clacu10g1232 Clacu-Chr10:25139578 Clacu02g2003 Clacu-Chr2:33467843 3.10E-132 transposed
Clacu10g1697 Clacu-Chr10:30470450 Clacu02g2003 Clacu-Chr2:33467843 3.50E-133 transposed
Clacu02g2003 Clacu-Chr2:33467843 Clacu07g0433 Clacu-Chr7:5219653 3.90E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47317 PF12796 Ank_2 2.00E-06 CL0465 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2003 - - - 0.0